Co-expression analysis

Gene ID	PtpAffx.119247.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g50665: unknown protein (HF=4e+0)
Module size	6 genes
NF	0.12
%ile	23.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.80	PtpAffx.119247.1.A1_at	DN486218	-	-	4e+0	At5g50665	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.78	PtpAffx.211622.1.S1_at	pmrna22777	-	-	9e-6	At1g35580	CINV1 (cytosolic invertase 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.80	PtpAffx.218251.1.S1_at	pmrna33803	hypothetical protein	-	2e+1	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.80	PtpAffx.219999.1.S1_at	pmrna36231	hypothetical protein	-	9e-6	At5g18170	GDH1 (GLUTAMATE DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.78	PtpAffx.206455.1.S1_at	pmrna12806	hypothetical protein	-	4e-2	At1g56300	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.78	PtpAffx.108322.1.A1_at	CV245001	-	-	9e-1	At5g49330	AtMYB111 (myb domain protein 111)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.5	99.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.3	97.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
6.0	97.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.39388.1.A1_at, orthologous to the query gene, PtpAffx.119247.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	98.7	TaAffx.39388.1.A1_at	At5g50665	-	-	8e-1	At4g15830	binding	O.I.	H.G.	S.X.	Please select
0.40	58.4	TaAffx.128545.1.S1_at	At5g50665	-	-	4e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.3365.1.S1_at	At5g50665	-	-	6e-1	At4g22220	ISU1	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.9241.1.A1_at	At5g50665	-	-	1e+1	At4g35840	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.7697.1.S1_at	At5g50665	-	-	7e-1	At5g06710	HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA)	O.I.	H.G.	S.X.	Please select
0.07	8.6	Ta.27783.1.S1_at	At5g50665	-	-	2e-19	At4g15415	ATB' GAMMA	O.I.	H.G.	S.X.	Please select
0.06	7.6	Ta.3335.1.S1_at	At5g50665	-	-	2e+0	At3g53520	UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.05	6.7	Ta.8336.1.S1_at	At5g50665	-	-	8e+0	At5g06270	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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