CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.119247.1.A1_at

Gene name
Homology with Arabidopsis Similar to At5g50665: unknown protein (HF=4e+0)

Module size 6 genes

NF 0.12

%ile 23.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 84.2 0.80 PtpAffx.119247.1.A1_at DN486218 - - 4e+0 At5g50665 unknown protein O.I. H.G. S.X.
0.36 61.6 0.78 PtpAffx.211622.1.S1_at pmrna22777 - - 9e-6 At1g35580 CINV1 (cytosolic invertase 1) O.I. H.G. S.X.
0.33 57.5 0.80 PtpAffx.218251.1.S1_at pmrna33803 hypothetical protein - 2e+1 At4g05050 UBQ11 (UBIQUITIN 11) O.I. H.G. S.X.
0.09 14.6 0.80 PtpAffx.219999.1.S1_at pmrna36231 hypothetical protein - 9e-6 At5g18170 GDH1 (GLUTAMATE DEHYDROGENASE 1) O.I. H.G. S.X.
0.07 11.6 0.78 PtpAffx.206455.1.S1_at pmrna12806 hypothetical protein - 4e-2 At1g56300 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.04 6.9 0.78 PtpAffx.108322.1.A1_at CV245001 - - 9e-1 At5g49330 AtMYB111 (myb domain protein 111) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.5 99.0 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.3 97.7 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
6.0 97.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6 91.3 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1 88.6 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0 88.0 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the rice gene, Os01g0365201, orthologous to the query gene, PtpAffx.119247.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os01g0365201 At5g50665 - - 4e+0 At1g49140 NADH-ubiquinone oxidoreductase-related O.I. H.G. S.X.
0.77 93.1 Os08g0114000 At5g50665 - Conserved hypothetical protein 7e+0 At1g03850 glutaredoxin family protein O.I. H.G. S.X.
0.67 87.2 Os10g0521300 At5g50665 - Inner membrane protein OXA1-like, mitochondrialprecursor 2e-1 At1g60250 zinc finger (B-box type) family protein O.I. H.G. S.X.
0.44 58.1 Os09g0432900 At5g50665 - Glycosyl transferase, family 31 protein 3e+0 At3g50830 COR413-PM2 (COLD-REGULATED 413-PLASMA MEMBRANE 2) O.I. H.G. S.X.
0.33 38.8 Os01g0900400 At5g50665 - Lipase, class 3 family protein 6e-1 At3g27270 - O.I. H.G. S.X.
0.12 7.2 Os07g0193400 At5g50665 - - 2e-3 At5g04690 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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