Co-expression analysis

Gene ID	PtpAffx.118999.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g43610: NLI interacting factor (NIF) family protein (HF=5e+0)
Module size	6 genes
NF	0.06
%ile	13.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.84	PtpAffx.118999.1.S1_at	DN497310	hypothetical protein	-	5e+0	At1g43610	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.84	PtpAffx.200668.1.S1_at	pmrna1299	hypothetical protein	-	1e+0	At4g00130	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.85	PtpAffx.116760.1.A1_at	CK089500	-	-	9e+0	At3g49920	VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.84	Ptp.6448.2.S1_at	CK093215	-	-	8e-2	At5g22700	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.84	PtpAffx.121370.1.A1_at	CV242512	-	-	1e+0	At5g42635	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.84	PtpAffx.118936.1.S1_at	BU811374	hypothetical protein	-	3e+0	At3g46630	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.3	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.8	94.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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