CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.11720.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g61210: SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) (HF=1e-5)

Module size 6 genes

NF 0.56

%ile 86.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 87.0 0.95 PtpAffx.11720.1.S1_at CV256791 hypothetical protein - 1e-5 At5g61210 SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) O.I. H.G. S.X.
0.60 86.0 0.95 PtpAffx.114764.1.A1_at CV244671 - - 2e+0 At2g43550 trypsin inhibitor, putative O.I. H.G. S.X.
0.55 82.2 0.95 PtpAffx.204811.1.S1_at pmrna9484 hypothetical protein - 1e-14 At5g13500 unknown protein O.I. H.G. S.X.
0.55 82.2 0.96 Ptp.5068.1.S1_a_at DN483716 hypothetical protein - 6e-3 At3g29170 unknown protein O.I. H.G. S.X.
0.46 73.7 0.96 Ptp.5068.2.A1_a_at CV247817 hypothetical protein - 6e-3 At3g29170 unknown protein O.I. H.G. S.X.
0.38 63.7 0.94 Ptp.3736.1.A1_at CV256427 hypothetical protein - 3e-24 At3g54020 phosphatidic acid phosphatase-related / PAP2-related O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.2 99.5 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.8 98.7 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0 88.0 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the maize gene, Zm.19178.1.S1_at, orthologous to the query gene, PtpAffx.11720.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.36 41.3 Zm.19178.1.S1_at At5g61210 hypothetical protein LOC100193037 - 2e+0 At5g07880 SNAP29 O.I. H.G. S.X.
0.60 77.8 Zm.16513.2.A1_at At5g61210 hypothetical protein LOC100191561 - 0 At5g09810 ACT7 (ACTIN 7) O.I. H.G. S.X.
0.53 69.1 Zm.5542.1.A1_at At5g61210 hypothetical protein LOC100193112 - 7e-4 At3g15140 exonuclease family protein O.I. H.G. S.X.
0.50 65.7 Zm.3971.1.S1_at At5g61210 hypothetical protein LOC100275101 - 5e-1 At5g49280 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.40 48.5 Zm.12231.1.A1_at At5g61210 - - 6e-6 At5g55530 C2 domain-containing protein O.I. H.G. S.X.
0.07 2.9 Zm.12169.1.S1_at At5g61210 - - 1e+0 At4g35300 TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera

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