Co-expression analysis

Gene ID	PtpAffx.11720.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g61210: SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) (HF=1e-5)
Module size	6 genes
NF	0.56
%ile	86.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	87.0	0.95	PtpAffx.11720.1.S1_at	CV256791	hypothetical protein	-	1e-5	At5g61210	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.95	PtpAffx.114764.1.A1_at	CV244671	-	-	2e+0	At2g43550	trypsin inhibitor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.95	PtpAffx.204811.1.S1_at	pmrna9484	hypothetical protein	-	1e-14	At5g13500	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.96	Ptp.5068.1.S1_a_at	DN483716	hypothetical protein	-	6e-3	At3g29170	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.96	Ptp.5068.2.A1_a_at	CV247817	hypothetical protein	-	6e-3	At3g29170	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.94	Ptp.3736.1.A1_at	CV256427	hypothetical protein	-	3e-24	At3g54020	phosphatidic acid phosphatase-related / PAP2-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.2	99.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.8	98.7	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0	88.0	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the barley gene, HY03I16T_at, orthologous to the query gene, PtpAffx.11720.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	87.4	HY03I16T_at	At5g61210	-	-	4e+0	At5g20100	unknown protein	O.I.	H.G.	S.X.	Please select
0.88	95.2	Contig8947_at	At5g61210	-	-	4e-2	At3g20800	rcd1-like cell differentiation protein, putative	O.I.	H.G.	S.X.	Please select
0.79	91.4	Contig1175_s_at	At5g61210	-	-	2e-21	At3g07110	60S ribosomal protein L13A (RPL13aA)	O.I.	H.G.	S.X.	Please select
0.76	89.8	Contig1790_at	At5g61210	-	-	2e+1	At5g10780	-	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig21007_at	At5g61210	-	-	1e+0	At2g27520	F-box family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig5551_at	At5g61210	-	-	1e-17	At2g32260	cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.65	81.4	Contig7380_at	At5g61210	-	-	2e-1	At3g01513	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	80.9	Contig10576_at	At5g61210	-	-	1e-21	At4g33080	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.55	72.0	Contig14708_at	At5g61210	-	-	6e-4	At2g21960	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	Contig7800_at	At5g61210	-	-	2e-33	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.55	72.0	Contig10910_at	At5g61210	-	-	3e+0	At4g36430	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.53	69.7	Y10834_at	At5g61210	-	-	2e-1	At4g12050	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.49	63.7	Contig7078_s_at	At5g61210	-	-	2e+0	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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