Co-expression analysis

Gene ID	PtpAffx.1172.2.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g48780: unknown protein (HF=1e+0)
Module size	13 genes
NF	0.34
%ile	60.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	88.6	0.90	PtpAffx.1172.2.A1_at	CV232336	-	-	1e+0	At1g48780	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.93	PtpAffx.203080.1.S1_at	pmrna6095	hypothetical protein	-	3e-24	At3g51470	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.90	PtpAffx.214837.1.S1_at	pmrna28728	white-brown-complex ABC transporter family	-	4e-3	At4g27420	ABC transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.94	PtpAffx.63071.1.A1_at	CV255719	-	-	1e-1	At4g19200	proline-rich family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.92	PtpAffx.203223.1.S1_at	pmrna6387	hypothetical protein	-	4e-18	At1g63120	ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.94	PtpAffx.204982.1.S1_s_at	pmrna9866	hypothetical protein	-	3e-12	At5g59790	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.95	Ptp.5560.1.A1_at	CK087847	hypothetical protein	-	5e+0	At5g52040	ATRSP41	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.94	PtpAffx.202007.1.S1_at	pmrna4000	amino acid transporter	-	2e-1	At1g52040	MBP1 (MYROSINASE-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.92	PtpAffx.213868.1.S1_at	pmrna27051	hypothetical protein	-	3e-46	At3g27440	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.94	PtpAffx.21546.1.S1_at	DN494511	hypothetical protein	-	4e+0	At4g01460	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.95	PtpAffx.66439.1.S1_a_at	DN485169	hypothetical protein	-	9e-15	At3g50110	ATPEN3 (ARABIDOPSIS THALIANA PTEN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.94	PtpAffx.153966.2.A1_at	CV235142	hypothetical protein	-	1e-7	At1g65320	CBS domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.91	PtpAffx.7814.2.A1_at	CV281562	hypothetical protein	-	7e-12	At5g47180	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	96.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage