Co-expression analysis

Gene ID PtpAffx.116727.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g35470: unknown protein (HF=1e-2)
Module size 7 genes
NF 0.22
%ile 40.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5683.90.88PtpAffx.116727.1.A1_atCK090798--1e-2At5g35470unknown proteinO.I.H.G.S.X.
0.4774.60.89PtpAffx.5181.1.A1_atCV258361--1e-1At5g48515-O.I.H.G.S.X.
0.2747.10.91PtpAffx.2026.1.S1_atBI125606--4e+0At5g62060F-box family proteinO.I.H.G.S.X.
0.2441.80.89PtpAffx.214463.1.S1_atpmrna28128--2e+0At1g20590cyclin, putativeO.I.H.G.S.X.
0.1729.10.89PtpAffx.140892.2.A1_a_atCV241766--3e-1At5g64905PROPEP3 (Elicitor peptide 3 precursor)O.I.H.G.S.X.
0.1626.90.89PtpAffx.121406.1.A1_s_atCV241112hypothetical protein-2e+0At5g45790ubiquitin thiolesteraseO.I.H.G.S.X.
0.1016.30.89PtpAffx.88299.1.A1_atCV273016--6e+0At3g11810unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.798.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.992.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.188.6GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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