CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.11623.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g09850: transcription elongation factor-related (HF=8e-25)

Module size 6 genes

NF 0.53

%ile 84.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.95 PtpAffx.11623.1.A1_at CV260515 hypothetical protein - 8e-25 At5g09850 transcription elongation factor-related O.I. H.G. S.X.
0.60 86.0 0.95 PtpAffx.13792.2.S1_at CV283738 hypothetical protein - 7e-14 At4g10610 CID12 O.I. H.G. S.X.
0.50 78.6 0.95 Ptp.824.1.S1_x_at CF936396 hypothetical protein - 2e+0 At4g20250 unknown protein O.I. H.G. S.X.
0.50 78.6 0.95 PtpAffx.20260.2.S1_a_at CV257316 hypothetical protein - 1e-3 At4g22190 unknown protein O.I. H.G. S.X.
0.44 71.9 0.97 PtpAffx.692.1.S1_x_at CX185889 hypothetical protein - 1e-1 At5g23950 C2 domain-containing protein O.I. H.G. S.X.
0.39 64.6 0.95 Ptp.3673.1.S1_s_at CK096543 hypothetical protein - 6e-1 At4g00355 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	91.1	0.95	PtpAffx.11623.1.A1_at	CV260515	hypothetical protein	-	8e-25	At5g09850	transcription elongation factor-related	O.I.	H.G.	S.X.
0.60	86.0	0.95	PtpAffx.13792.2.S1_at	CV283738	hypothetical protein	-	7e-14	At4g10610	CID12	O.I.	H.G.	S.X.
0.50	78.6	0.95	Ptp.824.1.S1_x_at	CF936396	hypothetical protein	-	2e+0	At4g20250	unknown protein	O.I.	H.G.	S.X.
0.50	78.6	0.95	PtpAffx.20260.2.S1_a_at	CV257316	hypothetical protein	-	1e-3	At4g22190	unknown protein	O.I.	H.G.	S.X.
0.44	71.9	0.97	PtpAffx.692.1.S1_x_at	CX185889	hypothetical protein	-	1e-1	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.
0.39	64.6	0.95	Ptp.3673.1.S1_s_at	CK096543	hypothetical protein	-	6e-1	At4g00355	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.63	88.1	0.93	PtpAffx.205481.1.S1_x_at	pmrna10842	hypothetical protein	-	5e-1	At5g17450	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	H.G.	S.X.
0.57	84.2	0.94	PtpAffx.225031.1.S1_at	pmrna44055	hypothetical protein	-	1e-3	At3g55550	lectin protein kinase, putative	O.I.	H.G.	S.X.
0.50	78.6	0.93	PtpAffx.9525.1.S1_at	CV233315	hypothetical protein	-	1e-4	At4g34150	C2 domain-containing protein	O.I.	H.G.	S.X.
0.50	78.6	0.95	PtpAffx.221517.1.S1_at	pmrna38443	hypothetical protein	-	1e-13	At1g17665	unknown protein	O.I.	H.G.	S.X.
0.47	74.6	0.91	PtpAffx.29992.1.A1_at	BU830136	-	-	4e-8	At3g61060	AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13)	O.I.	H.G.	S.X.
0.46	73.7	0.94	PtpAffx.14544.1.S1_at	CV260978	hypothetical protein	-	2e-2	At1g68020	ATTPS6	O.I.	H.G.	S.X.
0.41	67.7	0.90	Ptp.494.1.S1_s_at	CV271388	hypothetical protein	-	2e-4	At1g18300	atnudt4 (Arabidopsis thaliana Nudix hydrolase homolog 4)	O.I.	H.G.	S.X.
0.40	67.0	0.92	PtpAffx.210311.1.S1_at	pmrna20291	hypothetical protein	-	4e-1	At5g36100	unknown protein	O.I.	H.G.	S.X.
0.40	67.0	0.93	PtpAffx.65912.1.S1_at	CV258480	-	-	2e-16	At2g24570	WRKY17	O.I.	H.G.	S.X.
0.40	67.0	0.94	PtpAffx.3585.1.S1_at	DN484292	hypothetical protein	-	2e-10	At1g17160	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.
0.40	67.0	0.94	PtpAffx.214482.1.S1_at	pmrna28166	hypothetical protein	-	4e-21	At4g31000	calmodulin-binding protein	O.I.	H.G.	S.X.
0.38	63.7	0.92	Ptp.5817.1.S1_at	AJ776993	hypothetical protein	-	3e-18	At3g48530	KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1)	O.I.	H.G.	S.X.
0.38	63.7	0.94	PtpAffx.207242.1.S1_s_at	pmrna14353	hypothetical protein	-	2e-20	At4g35470	leucine-rich repeat family protein	O.I.	H.G.	S.X.
0.37	62.3	0.92	PtpAffx.25544.1.S1_at	CV250389	hypothetical protein	-	3e-4	At3g15358	unknown protein	O.I.	H.G.	S.X.
0.35	59.7	0.93	PtpAffx.6452.1.S1_at	CV256855	f-box family protein	-	3e-3	At3g07870	F-box family protein	O.I.	H.G.	S.X.
0.35	59.7	0.94	PtpAffx.32386.1.A1_a_at	CV245577	hypothetical protein	-	8e-3	At1g01780	LIM domain-containing protein	O.I.	H.G.	S.X.
0.33	57.5	0.95	PtpAffx.692.20.S1_s_at	BU883660	hypothetical protein	-	1e+0	At4g20250	unknown protein	O.I.	H.G.	S.X.
0.32	55.2	0.93	PtpAffx.207242.1.S1_at	pmrna14353	hypothetical protein	-	2e-20	At4g35470	leucine-rich repeat family protein	O.I.	H.G.	S.X.
0.32	55.2	0.91	PtpAffx.94034.1.S1_at	CX187310	hypothetical protein	-	4e-10	At1g68670	myb family transcription factor	O.I.	H.G.	S.X.
0.32	55.2	0.92	PtpAffx.209881.1.S1_at	pmrna19467	hypothetical protein	-	7e-11	At1g29340	PUB17 (PLANT U-BOX 17)	O.I.	H.G.	S.X.
0.31	53.7	0.92	PtpAffx.30187.2.S1_at	CX170990	hypothetical protein	-	2e-7	At3g48530	KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1)	O.I.	H.G.	S.X.
0.30	52.0	0.93	PtpAffx.219527.1.S1_at	pmrna35470	hypothetical protein	-	5e+0	At5g12130	PDE149 (PIGMENT DEFECTIVE 149)	O.I.	H.G.	S.X.
0.29	50.5	0.91	PtpAffx.30187.1.S1_at	CV264639	hypothetical protein	-	5e-7	At3g48530	KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1)	O.I.	H.G.	S.X.
0.29	50.5	0.92	PtpAffx.113508.1.S1_at	BU809203	hypothetical protein	-	1e+0	At1g74230	GR-RBP5 (glycine-rich RNA-binding protein 5)	O.I.	H.G.	S.X.
0.29	50.5	0.92	Ptp.3022.1.A1_s_at	CV274928	hypothetical protein	-	8e-43	At2g22800	HAT9	O.I.	H.G.	S.X.
0.29	50.5	0.94	PtpAffx.150530.1.S1_at	CX187047	hypothetical protein	-	8e-6	At4g00355	unknown protein	O.I.	H.G.	S.X.
0.29	50.5	0.94	PtpAffx.221518.1.S1_at	pmrna38444	hypothetical protein	-	2e-20	At1g17665	unknown protein	O.I.	H.G.	S.X.
0.27	47.1	0.92	Ptp.2523.1.S1_s_at	CV227907	hypothetical protein	-	2e-4	At5g11090	serine-rich protein-related	O.I.	H.G.	S.X.
0.27	47.1	0.92	PtpAffx.28796.1.S1_at	CV245075	hypothetical protein	-	5e-4	At2g38450	-	O.I.	H.G.	S.X.
0.27	47.1	0.92	PtpAffx.118422.2.S1_a_at	CK091385	hypothetical protein	-	1e-19	At3g47160	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.27	47.1	0.92	PtpAffx.36616.1.S1_at	CV228724	hypothetical protein	-	4e-11	At5g57850	aminotransferase class IV family protein	O.I.	H.G.	S.X.
0.26	45.2	0.92	PtpAffx.63173.1.A1_at	CV251405	-	-	5e-7	At2g46780	RNA binding / nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.
0.26	45.2	0.90	PtpAffx.11154.2.S1_at	CV238151	hypothetical protein	-	7e-10	At1g68490	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.94	PtpAffx.32882.1.A1_at	CK096564	histone deacetylase	-	3e-29	At5g63110	HDA6 (HISTONE DEACETYLASE 6)	O.I.	H.G.	S.X.
0.25	43.6	0.96	PtpAffx.115945.1.S1_s_at	CN521589	hypothetical protein	-	5e-2	At4g00355	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.0 92.9 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
3.0	92.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	PtpAffx.11623.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g09850: transcription elongation factor-related (HF=8e-25)
Module size	6 genes
NF	0.53
%ile	84.1

Co-expression analysis

Gene ID PtpAffx.11623.1.A1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At5g09850: transcription elongation factor-related (HF=8e-25) Module size 6 genes NF 0.53 %ile 84.1

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.11623.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g09850: transcription elongation factor-related (HF=8e-25)

Module size 6 genes

NF 0.53

%ile 84.1

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays