Co-expression analysis

Gene ID	PtpAffx.11623.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g09850: transcription elongation factor-related (HF=8e-25)
Module size	6 genes
NF	0.53
%ile	84.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.95	PtpAffx.11623.1.A1_at	CV260515	hypothetical protein	-	8e-25	At5g09850	transcription elongation factor-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.95	PtpAffx.13792.2.S1_at	CV283738	hypothetical protein	-	7e-14	At4g10610	CID12	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	Ptp.824.1.S1_x_at	CF936396	hypothetical protein	-	2e+0	At4g20250	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.20260.2.S1_a_at	CV257316	hypothetical protein	-	1e-3	At4g22190	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	PtpAffx.692.1.S1_x_at	CX185889	hypothetical protein	-	1e-1	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.95	Ptp.3673.1.S1_s_at	CK096543	hypothetical protein	-	6e-1	At4g00355	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	92.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.70755.1.S1_at, orthologous to the query gene, PtpAffx.11623.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	92.4	TaAffx.70755.1.S1_at	At5g09850	-	-	4e+0	At2g31490	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	TaAffx.18839.2.S1_at	At5g09850	-	-	1e+0	At3g02750	protein phosphatase 2C family protein / PP2C family protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.7295.3.S1_x_at	At5g09850	-	-	4e-3	At2g23420	NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.23108.3.S1_x_at	At5g09850	-	-	4e+0	At5g26870	AGL26	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.111921.1.S1_at	At5g09850	-	-	4e+0	At5g01650	macrophage migration inhibitory factor family protein / MIF family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.7193.2.S1_at	At5g09850	-	-	3e+0	At2g34690	ACD11 (ACCELERATED CELL DEATH 11)	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.10343.3.S1_at	At5g09850	-	-	4e+0	At2g39010	PIP2E (PLASMA MEMBRANE INTRINSIC PROTEIN 2E)	O.I.	H.G.	S.X.	Please select
0.24	30.3	TaAffx.7765.1.S1_at	At5g09850	-	-	2e-1	At4g33870	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.24	30.3	TaAffx.110096.1.S1_at	At5g09850	-	-	6e-3	At2g45530	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.1326.3.S1_at	At5g09850	-	-	3e-5	At5g16450	dimethylmenaquinone methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	TaAffx.117120.1.S1_at	At5g09850	-	-	4e+0	At1g56700	pyrrolidone-carboxylate peptidase family protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	TaAffx.82935.1.S1_at	At5g09850	-	-	5e-1	At1g60230	radical SAM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	TaAffx.110731.1.S1_at	At5g09850	-	-	2e+1	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.29371.1.S1_at	At5g09850	-	-	4e+0	At5g18310	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.7193.3.S1_at	At5g09850	-	-	1e+1	At5g08400	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	TaAffx.117368.1.S1_at	At5g09850	-	-	2e+1	At5g02780	In2-1 protein, putative	O.I.	H.G.	S.X.	Please select
0.13	14.6	TaAffx.23743.1.S1_at	At5g09850	-	-	3e-1	At2g28790	osmotin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.13	14.6	TaAffx.39330.1.A1_at	At5g09850	-	-	3e+0	At3g28950	avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related	O.I.	H.G.	S.X.	Please select
0.11	12.4	TaAffx.66587.1.S1_at	At5g09850	-	-	2e+0	At1g02620	GTP-binding protein (SAR1A)	O.I.	H.G.	S.X.	Please select
0.11	12.4	TaAffx.57555.1.S1_at	At5g09850	-	-	2e+1	At5g67600	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	11.3	TaAffx.113218.1.S1_at	At5g09850	-	-	5e-3	At5g42050	-	O.I.	H.G.	S.X.	Please select
0.09	10.4	Ta.13530.2.S1_x_at	At5g09850	-	-	8e-1	At1g68870	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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