Co-expression analysis

Gene ID	PtpAffx.11623.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g09850: transcription elongation factor-related (HF=8e-25)
Module size	6 genes
NF	0.53
%ile	84.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.95	PtpAffx.11623.1.A1_at	CV260515	hypothetical protein	-	8e-25	At5g09850	transcription elongation factor-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.95	PtpAffx.13792.2.S1_at	CV283738	hypothetical protein	-	7e-14	At4g10610	CID12	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	Ptp.824.1.S1_x_at	CF936396	hypothetical protein	-	2e+0	At4g20250	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.20260.2.S1_a_at	CV257316	hypothetical protein	-	1e-3	At4g22190	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	PtpAffx.692.1.S1_x_at	CX185889	hypothetical protein	-	1e-1	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.95	Ptp.3673.1.S1_s_at	CK096543	hypothetical protein	-	6e-1	At4g00355	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	92.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the barley gene, Contig26531_at, orthologous to the query gene, PtpAffx.11623.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	85.5	Contig26531_at	At5g09850	-	-	7e-5	At3g50550	unknown protein	O.I.	H.G.	S.X.	Please select
0.78	91.2	Contig5825_s_at	At5g09850	-	-	6e-2	At1g36050	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	Contig23168_at	At5g09850	-	-	4e-3	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig5352_at	At5g09850	-	-	2e+0	At5g62900	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig5781_at	At5g09850	-	-	7e-20	At3g30841	2,3-biphosphoglycerate-independent phosphoglycerate mutase-related / phosphoglyceromutase-related	O.I.	H.G.	S.X.	Please select
0.65	81.4	Contig5024_at	At5g09850	-	-	1e+1	At5g17080	cathepsin-related	O.I.	H.G.	S.X.	Please select
0.56	74.3	Contig8955_at	At5g09850	-	-	1e-1	At5g66110	metal ion binding	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig903_at	At5g09850	-	-	5e-11	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig13088_at	At5g09850	-	-	3e+0	At4g12440	adenine phosphoribosyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.47	62.2	rbaal1f12_s_at	At5g09850	-	-	4e-2	At1g58320	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig6909_at	At5g09850	-	-	6e-113	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig6908_at	At5g09850	-	-	1e+0	At3g60450	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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