Co-expression analysis

Gene ID	PtpAffx.11623.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g09850: transcription elongation factor-related (HF=8e-25)
Module size	6 genes
NF	0.53
%ile	84.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.95	PtpAffx.11623.1.A1_at	CV260515	hypothetical protein	-	8e-25	At5g09850	transcription elongation factor-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.95	PtpAffx.13792.2.S1_at	CV283738	hypothetical protein	-	7e-14	At4g10610	CID12	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	Ptp.824.1.S1_x_at	CF936396	hypothetical protein	-	2e+0	At4g20250	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.20260.2.S1_a_at	CV257316	hypothetical protein	-	1e-3	At4g22190	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	PtpAffx.692.1.S1_x_at	CX185889	hypothetical protein	-	1e-1	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.95	Ptp.3673.1.S1_s_at	CK096543	hypothetical protein	-	6e-1	At4g00355	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	92.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, Gma.2814.2.S1_at, orthologous to the query gene, PtpAffx.11623.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	Gma.2814.2.S1_at	At5g09850	-	-	2e-7	At5g09850	transcription elongation factor-related	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.9193.2.A1_at	At5g09850	-	-	4e+0	At3g49460	60S acidic ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.03	5.8	Gma.9744.1.A1_at	At5g09850	-	-	5e+0	At5g03580	polyadenylate-binding protein, putative / PABP, putative	O.I.	H.G.	S.X.	Please select
0.02	4.5	Gma.10933.5.S1_at	At5g09850	-	-	7e-122	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	O.I.	H.G.	S.X.	Please select
0.01	3.4	GmaAffx.58899.1.S1_at	At5g09850	C2-H2 zinc finger protein	-	4e-18	At1g34370	STOP1 (sensitive to proton rhizotoxicity 1)	O.I.	H.G.	S.X.	Please select
0.01	3.4	GmaAffx.76437.1.S1_at	At5g09850	-	-	2e-12	At5g39590	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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