Co-expression analysis

Gene ID	PtpAffx.115274.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g11880: AGL14 (agamous-like 14) (HF=1e+1)
Module size	6 genes
NF	0.25
%ile	44.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.82	PtpAffx.115274.1.A1_at	CV225684	-	-	1e+1	At4g11880	AGL14 (agamous-like 14)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.84	PtpAffx.99585.1.S1_at	BU887232	-	-	1e+1	At5g65430	GRF8 (GENERAL REGULATORY FACTOR 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.82	PtpAffx.39141.1.S1_at	BI127087	-	-	4e+0	At5g44730	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.81	PtpAffx.35277.1.S1_at	BU874449	-	-	3e+0	At3g04280	ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.82	PtpAffx.13421.1.S1_at	BU823258	-	-	2e+0	At3g15870	oxidoreductase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.81	PtpAffx.69483.1.A1_at	CV255661	-	-	3e-3	At5g10740	protein phosphatase 2C-related / PP2C-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7	91.8	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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