Co-expression analysis

Gene ID	PtpAffx.11494.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g44380: - (HF=1e-3)
Module size	7 genes
NF	0.43
%ile	72.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.94	PtpAffx.11494.1.S1_at	CV260585	hypothetical protein	-	1e-3	At3g44380	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.96	PtpAffx.95698.1.A1_s_at	CV235344	hypothetical protein	-	2e-8	At1g06190	ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.95	PtpAffx.153857.1.A1_at	CV239742	-	-	2e-5	At3g47450	NOA1 (NO ASSOCIATED 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.95	PtpAffx.32368.1.S1_a_at	CV278073	hypothetical protein	-	7e-40	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	PtpAffx.207374.1.S1_at	pmrna14628	hypothetical protein	-	4e-82	At5g66470	GTP binding / RNA binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.95	PtpAffx.32368.2.A1_at	CV238018	hypothetical protein	-	3e-49	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.95	PtpAffx.211806.1.S1_at	pmrna23151	hypothetical protein	-	2e-37	At2g48120	PAC (PALE CRESS)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.5	98.6	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.1	97.6	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0	92.9	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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