Co-expression analysis

Gene ID	PtpAffx.114927.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g38378: - (HF=2e-1)
Module size	7 genes
NF	0.19
%ile	35.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.88	PtpAffx.114927.1.A1_at	CV239325	-	-	2e-1	At5g38378	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.86	PtpAffx.148676.1.S1_at	CK110328	cytochrome P450 /// cytochrome P450 /// cytochrome P450	-	1e-4	At3g26300	CYP71B34	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.89	PtpAffx.39736.2.A1_a_at	CV263341	cytochrome P450	-	1e-3	At3g26280	CYP71B4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.90	PtpAffx.202861.1.S1_at	pmrna5660	hypothetical protein	-	6e-18	At2g25930	ELF3 (EARLY FLOWERING 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.88	Ptp.4992.1.S1_at	CV272923	hypothetical protein	-	5e-2	At3g51080	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.90	Ptp.1062.1.A1_at	CV262695	hypothetical protein	-	3e-35	At5g59160	TOPP2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.88	PtpAffx.46918.1.S1_at	CV238003	hypothetical protein	-	8e-2	At1g17490	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	91.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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