CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.11483.2.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g21790: RNR1 (RIBONUCLEOTIDE REDUCTASE 1) (HF=7e-2)

Module size 6 genes

NF 0.62

%ile 92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 97.0 0.96 PtpAffx.11483.2.A1_at CK106946 hypothetical protein - 7e-2 At2g21790 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) O.I. H.G. S.X.
0.67 91.1 0.95 PtpAffx.13609.1.S1_at CX167472 hypothetical protein - 2e-11 At1g30440 phototropic-responsive NPH3 family protein O.I. H.G. S.X.
0.60 86.0 0.96 Ptp.2544.1.A1_at CK087698 hypothetical protein - 1e-12 At3g24660 TMKL1 (transmembrane kinase-like 1) O.I. H.G. S.X.
0.50 78.6 0.96 Ptp.478.1.A1_at CK087253 hypothetical protein - 4e-1 At4g25410 DNA binding / transcription factor O.I. H.G. S.X.
0.46 73.7 0.96 PtpAffx.106138.1.S1_at BU889364 - - 2e+0 At4g17585 unknown protein O.I. H.G. S.X.
0.43 69.7 0.95 Ptp.7764.1.S1_at DN489656 hypothetical protein - 5e+0 At5g49170 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.83	97.0	0.96	PtpAffx.11483.2.A1_at	CK106946	hypothetical protein	-	7e-2	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	O.I.	H.G.	S.X.
0.67	91.1	0.95	PtpAffx.13609.1.S1_at	CX167472	hypothetical protein	-	2e-11	At1g30440	phototropic-responsive NPH3 family protein	O.I.	H.G.	S.X.
0.60	86.0	0.96	Ptp.2544.1.A1_at	CK087698	hypothetical protein	-	1e-12	At3g24660	TMKL1 (transmembrane kinase-like 1)	O.I.	H.G.	S.X.
0.50	78.6	0.96	Ptp.478.1.A1_at	CK087253	hypothetical protein	-	4e-1	At4g25410	DNA binding / transcription factor	O.I.	H.G.	S.X.
0.46	73.7	0.96	PtpAffx.106138.1.S1_at	BU889364	-	-	2e+0	At4g17585	unknown protein	O.I.	H.G.	S.X.
0.43	69.7	0.95	Ptp.7764.1.S1_at	DN489656	hypothetical protein	-	5e+0	At5g49170	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.80	96.0	0.94	PtpAffx.16306.1.S1_at	DN497208	cytochrome P450	-	3e-1	At3g26320	CYP71B36	O.I.	H.G.	S.X.
0.67	91.1	0.96	Ptp.789.1.S1_at	CK089311	hypothetical protein	-	8e-8	At2g41820	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.
0.55	82.2	0.94	Ptp.4115.1.S1_at	AJ777870	hypothetical protein	-	1e-1	At1g72150	PATL1 (PATELLIN 1)	O.I.	H.G.	S.X.
0.50	78.6	0.93	Ptp.2707.1.S1_at	BU826219	hypothetical protein	-	1e-1	At1g78520	-	O.I.	H.G.	S.X.
0.50	78.6	0.94	PtpAffx.5036.2.A1_at	BU832900	-	-	2e+1	At5g37480	unknown protein	O.I.	H.G.	S.X.
0.50	78.6	0.95	Ptp.6684.1.S1_at	DN484836	hypothetical protein	-	1e+0	At5g63700	zinc finger (C3HC4 type RING finger) family protein	O.I.	H.G.	S.X.
0.44	71.9	0.92	Ptp.324.1.S1_at	CK088350	-	-	5e+0	At5g65230	AtMYB53 (myb domain protein 53)	O.I.	H.G.	S.X.
0.44	71.9	0.93	PtpAffx.18355.2.S1_at	CX655003	-	-	2e+0	At2g33440	splicing factor family protein	O.I.	H.G.	S.X.
0.44	71.9	0.94	Ptp.225.1.A1_at	CK087574	hypothetical protein	-	1e+0	At4g20300	unknown protein	O.I.	H.G.	S.X.
0.44	71.9	0.95	Ptp.4669.1.S1_at	CK088332	-	-	8e-13	At3g53190	pectate lyase family protein	O.I.	H.G.	S.X.
0.44	71.9	0.96	Ptp.7158.1.S1_at	CV246958	-	-	8e+0	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	O.I.	H.G.	S.X.
0.43	69.7	0.93	PtpAffx.908.1.S1_at	CV263697	hypothetical protein	-	5e+0	At4g33720	pathogenesis-related protein, putative	O.I.	H.G.	S.X.
0.43	69.7	0.94	PtpAffx.39559.1.S1_at	CF237196	hypothetical protein	-	3e+0	At3g45460	zinc ion binding	O.I.	H.G.	S.X.
0.43	69.7	0.95	Ptp.3671.1.S1_at	CK112025	hypothetical protein	-	3e-2	At5g58580	ATL63 (ARABIDOPSIS TÓ	O.I.	H.G.	S.X.
0.40	67.0	0.91	PtpAffx.45906.1.A1_at	CK088976	hypothetical protein	-	5e-1	At2g16040	hAT dimerisation domain-containing protein / transposase-related	O.I.	H.G.	S.X.
0.40	67.0	0.91	Ptp.7675.1.S1_at	DN488945	hypothetical protein	-	6e-3	At3g50740	UGT72E1 (UDP-glucosyl transferase 72E1)	O.I.	H.G.	S.X.
0.36	61.6	0.92	Ptp.6755.1.S1_at	AY378090.1	hypothetical protein	-	6e-1	At5g46700	TRN2 (TORNADO 2)	O.I.	H.G.	S.X.
0.36	61.6	0.93	Ptp.6755.1.S1_x_at	AY378090.1	hypothetical protein	-	6e-1	At5g46700	TRN2 (TORNADO 2)	O.I.	H.G.	S.X.
0.36	61.6	0.94	PtpAffx.1704.2.S1_at	CK088122	-	-	3e-5	At1g28400	unknown protein	O.I.	H.G.	S.X.
0.36	61.6	0.94	PtpAffx.82175.1.A1_at	CV257523	hypothetical protein	-	7e-27	At5g51060	RHD2 (ROOT HAIR DEFECTIVE 2)	O.I.	H.G.	S.X.
0.36	61.6	0.94	Ptp.2693.1.A1_at	CV231334	hypothetical protein	-	9e-8	At3g20015	aspartic-type endopeptidase	O.I.	H.G.	S.X.
0.36	61.6	0.95	Ptp.4266.1.S1_at	BU835509	-	-	2e-11	At1g02970	WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG)	O.I.	H.G.	S.X.
0.36	61.6	0.95	PtpAffx.26773.2.A1_at	CF232644	hypothetical protein	-	1e+0	At4g12840	unknown protein	O.I.	H.G.	S.X.
0.36	61.6	0.90	PtpAffx.213823.1.S1_at	pmrna26979	hypothetical protein	-	3e-2	At5g64240	AtMC3 (metacaspase 3)	O.I.	H.G.	S.X.
0.33	57.5	0.95	Ptp.317.1.S1_s_at	CK088298	glycoside hydrolase	-	7e-3	At3g46570	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.
0.32	55.2	0.90	PtpAffx.891.16.A1_at	CV241926	tubulin, beta chain /// tubulin, beta chain	-	3e-53	At5g62700	TUB3	O.I.	H.G.	S.X.
0.31	53.7	0.92	PtpAffx.48361.1.A1_at	DN486532	hypothetical protein	-	3e+0	At5g03990	unknown protein	O.I.	H.G.	S.X.
0.31	53.7	0.94	PtpAffx.224333.1.S1_at	pmrna42787	hypothetical protein	-	1e-1	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	O.I.	H.G.	S.X.
0.30	52.0	0.92	PtpAffx.211365.1.S1_at	pmrna22277	hypothetical protein	-	8e-5	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	O.I.	H.G.	S.X.
0.30	52.0	0.92	PtpAffx.52121.1.S1_at	CF235981	hypothetical protein	-	5e+0	At4g03620	myosin heavy chain-related	O.I.	H.G.	S.X.
0.29	50.5	0.93	PtpAffx.64204.1.A1_at	BP933629	-	-	2e+0	At5g02730	allergen V5/Tpx-1-related family protein	O.I.	H.G.	S.X.
0.29	50.5	0.93	Ptp.468.2.A1_at	CK089294	hypothetical protein	-	3e-17	At5g54110	ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED)	O.I.	H.G.	S.X.
0.29	50.5	0.94	Ptp.7622.1.S1_at	CV268011	hypothetical protein	-	5e-11	At5g53320	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.
0.27	47.1	0.90	PtpAffx.15112.1.S1_at	CV264179	-	-	6e-15	At4g25750	ABC transporter family protein	O.I.	H.G.	S.X.
0.27	47.1	0.91	Ptp.4146.1.S1_s_at	CN518574	hypothetical protein	-	2e-13	At5g65020	ANNAT2 (Annexin Arabidopsis 2)	O.I.	H.G.	S.X.
0.27	47.1	0.93	PtpAffx.149060.1.A1_at	CK093020	-	-	8e-2	At4g35930	-	O.I.	H.G.	S.X.
0.27	47.1	0.93	PtpAffx.26865.1.S1_at	CF233918	hypothetical protein	-	1e-1	At2g32800	AP4.3A	O.I.	H.G.	S.X.
0.27	47.1	0.93	PtpAffx.205796.1.S1_at	pmrna11458	hypothetical protein	-	5e-2	At1g19715	jacalin lectin family protein	O.I.	H.G.	S.X.
0.27	47.1	0.94	PtpAffx.224333.1.S1_x_at	pmrna42787	hypothetical protein	-	1e-1	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	O.I.	H.G.	S.X.
0.27	47.1	0.95	PtpAffx.54313.2.S1_at	BU895504	hypothetical protein	-	6e-4	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	O.I.	H.G.	S.X.
0.26	45.2	0.90	PtpAffx.9880.1.S1_at	BU887905	-	-	2e+0	At3g10912	CPuORF63 (Conserved peptide upstream open reading frame 63)	O.I.	H.G.	S.X.
0.26	45.2	0.91	Ptp.6471.1.S1_at	CN549809	-	-	2e-9	At1g09610	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.93	PtpAffx.32985.1.S1_at	BU894187	hypothetical protein	-	2e+0	At3g26350	-	O.I.	H.G.	S.X.
0.25	43.6	0.94	PtpAffx.47790.1.S1_at	CV283685	hypothetical protein	-	3e-4	At1g68760	ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.6 98.3 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.7 97.9 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1 95.5 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9 87.2 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9 87.2 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
7.6	98.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.7	97.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1	95.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	PtpAffx.11483.2.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g21790: RNR1 (RIBONUCLEOTIDE REDUCTASE 1) (HF=7e-2)
Module size	6 genes
NF	0.62
%ile	92.0

Co-expression analysis

Gene ID PtpAffx.11483.2.A1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At2g21790: RNR1 (RIBONUCLEOTIDE REDUCTASE 1) (HF=7e-2) Module size 6 genes NF 0.62 %ile 92.0

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.11483.2.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g21790: RNR1 (RIBONUCLEOTIDE REDUCTASE 1) (HF=7e-2)

Module size 6 genes

NF 0.62

%ile 92.0

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays