Co-expression analysis

Gene ID	PtpAffx.11483.2.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g21790: RNR1 (RIBONUCLEOTIDE REDUCTASE 1) (HF=7e-2)
Module size	6 genes
NF	0.62
%ile	92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.96	PtpAffx.11483.2.A1_at	CK106946	hypothetical protein	-	7e-2	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.13609.1.S1_at	CX167472	hypothetical protein	-	2e-11	At1g30440	phototropic-responsive NPH3 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.96	Ptp.2544.1.A1_at	CK087698	hypothetical protein	-	1e-12	At3g24660	TMKL1 (transmembrane kinase-like 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	Ptp.478.1.A1_at	CK087253	hypothetical protein	-	4e-1	At4g25410	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.96	PtpAffx.106138.1.S1_at	BU889364	-	-	2e+0	At4g17585	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.95	Ptp.7764.1.S1_at	DN489656	hypothetical protein	-	5e+0	At5g49170	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.7	97.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1	95.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.228.1.A1_at, orthologous to the query gene, PtpAffx.11483.2.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	48.5	ZmAffx.228.1.A1_at	At2g21790	-	-	5e-2	At5g59000	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.83	95.6	Zm.4299.1.S1_at	At2g21790	hypothetical protein LOC100279924	-	5e-14	At3g21630	CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1)	O.I.	H.G.	S.X.	Please select
0.60	77.8	Zm.6559.1.A1_at	At2g21790	-	-	3e-14	At5g26830	threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.19021.1.A1_at	At2g21790	virulence-related protein Nf314	-	9e-7	At2g35780	scpl26 (serine carboxypeptidase-like 26)	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.6376.1.A1_at	At2g21790	-	-	2e-1	At1g68560	XYL1 (ALPHA-XYLOSIDASE 1)	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.13412.1.S1_x_at	At2g21790	-	-	2e-7	At2g36230	APG10 (ALBINO AND PALE GREEN 10)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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