CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.11483.2.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g21790: RNR1 (RIBONUCLEOTIDE REDUCTASE 1) (HF=7e-2)

Module size 6 genes

NF 0.62

%ile 92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 97.0 0.96 PtpAffx.11483.2.A1_at CK106946 hypothetical protein - 7e-2 At2g21790 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) O.I. H.G. S.X.
0.67 91.1 0.95 PtpAffx.13609.1.S1_at CX167472 hypothetical protein - 2e-11 At1g30440 phototropic-responsive NPH3 family protein O.I. H.G. S.X.
0.60 86.0 0.96 Ptp.2544.1.A1_at CK087698 hypothetical protein - 1e-12 At3g24660 TMKL1 (transmembrane kinase-like 1) O.I. H.G. S.X.
0.50 78.6 0.96 Ptp.478.1.A1_at CK087253 hypothetical protein - 4e-1 At4g25410 DNA binding / transcription factor O.I. H.G. S.X.
0.46 73.7 0.96 PtpAffx.106138.1.S1_at BU889364 - - 2e+0 At4g17585 unknown protein O.I. H.G. S.X.
0.43 69.7 0.95 Ptp.7764.1.S1_at DN489656 hypothetical protein - 5e+0 At5g49170 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.6 98.3 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.7 97.9 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1 95.5 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9 87.2 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9 87.2 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the rice gene, Os06g0168600, orthologous to the query gene, PtpAffx.11483.2.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 Os06g0168600 At2g21790 - Ribonucleotide reductase 1e-96 At2g21790 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) O.I. H.G. S.X.
0.60 79.7 Os06g0127900 At2g21790 - Ribonucleoside-diphosphate reductase small chain(EC 1.17.4.1) (Ribonucleotide reductase R2 subunit) 2e-7 At3g27060 TSO2 (TSO meaning 'ugly' in Chinese) O.I. H.G. S.X.
0.31 34.5 Os02g0829100 At2g21790 - Nucleic acid-binding OB-fold domain containingprotein 3e+0 At5g01390 DNAJ heat shock protein, putative O.I. H.G. S.X.
0.29 31.1 Os06g0671800 At2g21790 - Cellular retinaldehyde binding/alpha-tocopheroltransport family protein 8e-1 At5g34581 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.15 10.3 Os07g0105700 At2g21790 - Carboxy-terminal kinesin 2 (XCTK2) 9e-8 At4g05190 ATK5 (ARABIDOPSIS THALIANA KINESIN 5) O.I. H.G. S.X.
0.13 8.2 Os04g0512400 At2g21790 - BRCT domain containing protein 1e+0 At1g77932 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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