CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.11483.2.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g21790: RNR1 (RIBONUCLEOTIDE REDUCTASE 1) (HF=7e-2)

Module size 6 genes

NF 0.62

%ile 92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 97.0 0.96 PtpAffx.11483.2.A1_at CK106946 hypothetical protein - 7e-2 At2g21790 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) O.I. H.G. S.X.
0.67 91.1 0.95 PtpAffx.13609.1.S1_at CX167472 hypothetical protein - 2e-11 At1g30440 phototropic-responsive NPH3 family protein O.I. H.G. S.X.
0.60 86.0 0.96 Ptp.2544.1.A1_at CK087698 hypothetical protein - 1e-12 At3g24660 TMKL1 (transmembrane kinase-like 1) O.I. H.G. S.X.
0.50 78.6 0.96 Ptp.478.1.A1_at CK087253 hypothetical protein - 4e-1 At4g25410 DNA binding / transcription factor O.I. H.G. S.X.
0.46 73.7 0.96 PtpAffx.106138.1.S1_at BU889364 - - 2e+0 At4g17585 unknown protein O.I. H.G. S.X.
0.43 69.7 0.95 Ptp.7764.1.S1_at DN489656 hypothetical protein - 5e+0 At5g49170 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.6 98.3 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.7 97.9 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1 95.5 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9 87.2 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9 87.2 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, Gma.9608.1.S1_at, orthologous to the query gene, PtpAffx.11483.2.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 88.9 Gma.9608.1.S1_at At2g21790 ribonucleotide reductase large subunit B - 2e-141 At2g21790 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) O.I. H.G. S.X.
0.75 89.5 Gma.2371.1.S1_at At2g21790 - - 5e-88 At1g44900 ATP binding / DNA binding / DNA-dependent ATPase O.I. H.G. S.X.
0.67 86.1 GmaAffx.39814.1.S1_at At2g21790 - - 3e-1 At5g61000 replication protein, putative O.I. H.G. S.X.
0.67 86.1 GmaAffx.36066.1.S1_at At2g21790 - - 5e+0 At4g20410 GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN) O.I. H.G. S.X.
0.59 79.5 Gma.15137.1.S1_at At2g21790 - - 1e-84 At4g33400 dem protein-related / defective embryo and meristems protein-related O.I. H.G. S.X.
0.59 79.5 GmaAffx.50239.1.A1_at At2g21790 - - 2e-5 At2g16440 DNA replication licensing factor, putative O.I. H.G. S.X.
0.40 57.1 Gma.16073.1.S1_at At2g21790 - - 5e-28 At1g51060 HTA10 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage