CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.11483.2.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g21790: RNR1 (RIBONUCLEOTIDE REDUCTASE 1) (HF=7e-2)

Module size 6 genes

NF 0.62

%ile 92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 97.0 0.96 PtpAffx.11483.2.A1_at CK106946 hypothetical protein - 7e-2 At2g21790 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) O.I. H.G. S.X.
0.67 91.1 0.95 PtpAffx.13609.1.S1_at CX167472 hypothetical protein - 2e-11 At1g30440 phototropic-responsive NPH3 family protein O.I. H.G. S.X.
0.60 86.0 0.96 Ptp.2544.1.A1_at CK087698 hypothetical protein - 1e-12 At3g24660 TMKL1 (transmembrane kinase-like 1) O.I. H.G. S.X.
0.50 78.6 0.96 Ptp.478.1.A1_at CK087253 hypothetical protein - 4e-1 At4g25410 DNA binding / transcription factor O.I. H.G. S.X.
0.46 73.7 0.96 PtpAffx.106138.1.S1_at BU889364 - - 2e+0 At4g17585 unknown protein O.I. H.G. S.X.
0.43 69.7 0.95 Ptp.7764.1.S1_at DN489656 hypothetical protein - 5e+0 At5g49170 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.6 98.3 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.7 97.9 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1 95.5 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9 87.2 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9 87.2 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g21790, orthologous to the query gene, PtpAffx.11483.2.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.40 50.8 At2g21790 816715 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) encodes large subunit of ribonucleotide reductase involved in the production of deoxyribonucleoside triphosphates (dNTPs) for DNA replication and repair O.I. H.G. S.X.
0.75 86.9 At1g07370 837249 PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation. O.I. H.G. S.X.
0.60 75.7 At2g29570 817506 PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) Functionally interacts with POLH to repair DNA damaged by UVB damage. O.I. H.G. S.X.
0.57 73.8 At5g10390 830903 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO O.I. H.G. S.X.
0.32 35.7 At5g61000 836221 replication protein, putative F:DNA binding, nucleic acid binding;P:DNA replication;C:nucleus;PMOFA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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