Co-expression analysis

Gene ID	PtpAffx.114748.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g42720: glycosyl hydrolase family 17 protein (HF=3e-14)
Module size	6 genes
NF	0.49
%ile	79.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.95	PtpAffx.114748.1.A1_at	CV245313	hypothetical protein	-	3e-14	At5g42720	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	PtpAffx.212088.1.S1_s_at	pmrna23715	DNA methyltransferase /// DNA methyltransferase	-	3e-49	At5g49160	MET1 (METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.96	PtpAffx.212088.1.S1_at	pmrna23715	DNA methyltransferase	-	3e-49	At5g49160	MET1 (METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.94	Ptp.2607.2.S1_a_at	BU894129	hypothetical protein	-	1e+0	At2g03850	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	PtpAffx.208817.1.S1_at	pmrna17485	hypothetical protein	-	9e-26	At5g26830	threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.96	Ptp.3295.1.S1_at	BU813448	hypothetical protein	-	1e-3	At3g05545	transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.1	98.7	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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