Co-expression analysis

Gene ID PtpAffx.114748.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g42720: glycosyl hydrolase family 17 protein (HF=3e-14)
Module size 6 genes
NF 0.49
%ile 79.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.95PtpAffx.114748.1.A1_atCV245313hypothetical protein-3e-14At5g42720glycosyl hydrolase family 17 proteinO.I.H.G.S.X.
0.6791.10.96PtpAffx.212088.1.S1_s_atpmrna23715DNA methyltransferase /// DNA methyltransferase-3e-49At5g49160MET1 (METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.6086.00.96PtpAffx.212088.1.S1_atpmrna23715DNA methyltransferase-3e-49At5g49160MET1 (METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.5380.50.94Ptp.2607.2.S1_a_atBU894129hypothetical protein-1e+0At2g03850late embryogenesis abundant domain-containing protein / LEA domain-containing proteinO.I.H.G.S.X.
0.4471.90.96PtpAffx.208817.1.S1_atpmrna17485hypothetical protein-9e-26At5g26830threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)O.I.H.G.S.X.
0.1423.50.96Ptp.3295.1.S1_atBU813448hypothetical protein-1e-3At3g05545transcription factor, putative / zinc finger (C3HC4 type RING finger) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.198.7GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.395.8GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.794.7GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.892.1GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.289.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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