Co-expression analysis

Gene ID	PtpAffx.114663.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g08390: nucleic acid binding (HF=1e-3)
Module size	10 genes
NF	0.12
%ile	24.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.7	0.89	PtpAffx.114663.1.A1_at	CV249914	-	-	1e-3	At1g08390	nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.94	Ptp.4071.2.S1_at	CV232545	hypothetical protein	-	8e-51	At4g30330	small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.94	PtpAffx.56582.1.A1_s_at	CV259479	hypothetical protein	-	5e-2	At1g75920	family II extracellular lipase 5 (EXL5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.94	PtpAffx.9411.1.A1_at	BP934185	hypothetical protein	-	5e-9	At2g39550	PGGT-I	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.95	Ptp.4391.2.A1_s_at	CV229557	hypothetical protein	-	3e-14	At1g32400	TOM2A (TOBAMOVIRUS MULTIPLICATION 2A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.95	Ptp.643.1.S1_at	CK087681	hypothetical protein	-	2e-89	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.94	Ptp.2609.2.S1_at	CV283556	hypothetical protein	-	4e-91	At2g31610	40S ribosomal protein S3 (RPS3A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.94	PtpAffx.22429.2.A1_a_at	DN492140	hypothetical protein	-	5e-7	At5g57950	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.93	PtpAffx.50167.1.A1_a_at	CV256630	tubulin folding cofactor	-	2e-28	At3g10220	tubulin folding cofactor B	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.95	Ptp.7537.1.S1_s_at	CV236898	hypothetical protein	-	6e-57	At5g65430	GRF8 (GENERAL REGULATORY FACTOR 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	91.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.6	84.5	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.4	82.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.4	82.3	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.4	82.3	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage