CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.114566.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g17710: unknown protein (HF=2e-1)

Module size 6 genes

NF 0.14

%ile 27.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 87.0 0.92 PtpAffx.114566.1.A1_at CV254112 hypothetical protein - 2e-1 At2g17710 unknown protein O.I. H.G. S.X.
0.40 67.0 0.92 PtpAffx.24700.1.A1_at CV249721 hypothetical protein - 8e-2 At4g13940 MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) O.I. H.G. S.X.
0.17 29.1 0.92 PtpAffx.5021.1.S1_at CK090757 hypothetical protein - 1e-4 At1g54360 TAF6B4 (TBP-ASSOCIATED FACTOR 6B4) O.I. H.G. S.X.
0.14 23.5 0.92 PtpAffx.45958.1.A1_at DN492279 hypothetical protein - 7e-55 At1g02410 cytochrome c oxidase assembly protein CtaG / Cox11 family O.I. H.G. S.X.
0.11 18.1 0.92 PtpAffx.203818.1.S1_x_at pmrna7547 hypothetical protein - 3e-2 At1g12520 ATCCS (COPPER CHAPERONE FOR SOD1) O.I. H.G. S.X.
0.04 6.9 0.92 PtpAffx.147674.1.A1_at CV229116 hypothetical protein - 3e+0 At1g08710 F-box family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.61	87.0	0.92	PtpAffx.114566.1.A1_at	CV254112	hypothetical protein	-	2e-1	At2g17710	unknown protein	O.I.	H.G.	S.X.
0.40	67.0	0.92	PtpAffx.24700.1.A1_at	CV249721	hypothetical protein	-	8e-2	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	O.I.	H.G.	S.X.
0.17	29.1	0.92	PtpAffx.5021.1.S1_at	CK090757	hypothetical protein	-	1e-4	At1g54360	TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)	O.I.	H.G.	S.X.
0.14	23.5	0.92	PtpAffx.45958.1.A1_at	DN492279	hypothetical protein	-	7e-55	At1g02410	cytochrome c oxidase assembly protein CtaG / Cox11 family	O.I.	H.G.	S.X.
0.11	18.1	0.92	PtpAffx.203818.1.S1_x_at	pmrna7547	hypothetical protein	-	3e-2	At1g12520	ATCCS (COPPER CHAPERONE FOR SOD1)	O.I.	H.G.	S.X.
0.04	6.9	0.92	PtpAffx.147674.1.A1_at	CV229116	hypothetical protein	-	3e+0	At1g08710	F-box family protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.55	82.2	0.87	PtpAffx.207893.1.S1_at	pmrna15669	hypothetical protein	-	2e-18	At5g46110	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)	O.I.	H.G.	S.X.
0.50	78.6	0.93	PtpAffx.7042.1.S1_at	BI123470	-	-	2e+0	At5g40382	cytochrome-c oxidase	O.I.	H.G.	S.X.
0.47	74.6	0.90	PtpAffx.211575.1.S1_at	pmrna22686	hypothetical protein	-	1e+0	At3g10815	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.46	73.7	0.91	PtpAffx.25107.1.A1_at	CV232778	-	-	1e+1	Atcg00900	-	O.I.	H.G.	S.X.
0.44	71.9	0.87	PtpAffx.211405.1.S1_x_at	pmrna22350	hypothetical protein	-	3e-1	At5g55850	NOI	O.I.	H.G.	S.X.
0.44	71.9	0.89	Ptp.776.1.A1_at	CK089153	hypothetical protein	-	3e-1	At3g56980	BHLH039	O.I.	H.G.	S.X.
0.42	68.6	0.90	PtpAffx.219071.1.S1_at	pmrna34877	hypothetical protein	-	2e-34	Atcg00350	-	O.I.	H.G.	S.X.
0.40	67.0	0.89	PtpAffx.159846.1.A1_at	CV257434	-	-	6e+0	At5g52690	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.38	63.7	0.86	PtpAffx.63820.1.A1_at	CV226447	-	-	1e-3	At1g23290	RPL27AB	O.I.	H.G.	S.X.
0.38	63.7	0.87	PtpAffx.220319.1.S1_at	pmrna36690	-	-	5e+0	At5g20165	unknown protein	O.I.	H.G.	S.X.
0.38	63.7	0.87	PtpAffx.28873.1.S1_at	DN488318	-	-	1e-1	At5g37860	copper-binding family protein	O.I.	H.G.	S.X.
0.38	63.7	0.88	Ptp.3301.1.S1_at	DN485494	-	-	2e-3	At4g09800	RPS18C (S18 RIBOSOMAL PROTEIN)	O.I.	H.G.	S.X.
0.36	61.6	0.87	PtpAffx.213832.1.S1_at	pmrna26991	hypothetical protein	-	1e-5	At1g67320	DNA primase, large subunit family	O.I.	H.G.	S.X.
0.36	61.6	0.87	PtpAffx.213747.1.S1_at	pmrna26835	bromodomain protein	-	1e+0	At4g36240	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.
0.36	61.6	0.87	PtpAffx.97302.1.A1_at	CK091189	hypothetical protein	-	2e-2	Atcg00170	-	O.I.	H.G.	S.X.
0.36	61.6	0.89	PtpAffx.37866.1.A1_s_at	CV235780	hypothetical protein	-	1e-1	At4g34480	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	O.I.	H.G.	S.X.
0.36	61.6	0.93	PtpAffx.217755.1.S1_at	pmrna33144	hypothetical protein	-	6e+0	At2g06530	VPS2.1	O.I.	H.G.	S.X.
0.36	61.6	0.94	PtpAffx.140460.1.A1_at	CV257451	hypothetical protein	-	4e-23	At1g07030	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.
0.36	61.6	0.89	PtpAffx.213434.1.S1_at	pmrna26267	hypothetical protein	-	5e-2	At2g04550	IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5)	O.I.	H.G.	S.X.
0.33	57.5	0.86	PtpAffx.849.5.A1_at	CV270817	hypothetical protein	-	2e-42	At3g23390	60S ribosomal protein L36a/L44 (RPL36aA)	O.I.	H.G.	S.X.
0.32	55.2	0.87	Ptp.736.2.A1_at	CV248104	-	-	2e-12	At3g62770	AtATG18a	O.I.	H.G.	S.X.
0.31	53.7	0.84	PtpAffx.222588.1.S1_at	pmrna40117	hypothetical protein	-	3e-1	At5g37840	-	O.I.	H.G.	S.X.
0.31	53.7	0.86	PtpAffx.18966.1.A1_at	CV227214	hypothetical protein	-	3e+0	At5g42785	unknown protein	O.I.	H.G.	S.X.
0.30	52.0	0.89	PtpAffx.200689.1.S1_at	pmrna1337	hypothetical protein	-	4e+0	At5g08370	AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2)	O.I.	H.G.	S.X.
0.30	52.0	0.89	PtpAffx.215976.1.S1_at	pmrna30470	hypothetical protein	-	4e-25	At3g07330	ATCSLC6 (CELLULOSE-SYNTHASE LIKE C6)	O.I.	H.G.	S.X.
0.29	50.5	0.88	PtpAffx.134623.1.A1_at	CV228876	-	-	2e+0	At5g39870	unknown protein	O.I.	H.G.	S.X.
0.29	50.5	0.92	PtpAffx.58812.1.A1_at	CK090191	hypothetical protein	-	1e+0	At2g44310	calcium-binding EF hand family protein	O.I.	H.G.	S.X.
0.27	47.1	0.87	PtpAffx.210741.1.S1_at	pmrna21072	hypothetical protein	-	1e-9	At5g52270	vesicle transport protein-related	O.I.	H.G.	S.X.
0.27	47.1	0.88	PtpAffx.217729.1.S1_at	pmrna33097	-	-	7e+0	At5g37220	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.27	47.1	0.93	PtpAffx.202936.1.S1_x_at	pmrna5810	hypothetical protein	-	1e-47	At1g79930	HSP91	O.I.	H.G.	S.X.
0.26	45.2	0.87	PtpAffx.216948.1.S1_at	pmrna32027	hypothetical protein	-	1e+0	At5g04047	-	O.I.	H.G.	S.X.
0.25	43.6	0.87	PtpAffx.159243.1.A1_at	CV281841	-	-	3e-1	At2g18070	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.89	PtpAffx.7909.2.A1_a_at	CV255887	hypothetical protein	-	6e-31	At1g51710	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.4 98.2 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.4 98.2 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
6.8 98.0 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.6 96.2 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7 85.5 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
7.4	98.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.4	98.2	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
6.8	98.0	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7	85.5	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	PtpAffx.114566.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g17710: unknown protein (HF=2e-1)
Module size	6 genes
NF	0.14
%ile	27.6

Co-expression analysis

Gene ID PtpAffx.114566.1.A1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At2g17710: unknown protein (HF=2e-1) Module size 6 genes NF 0.14 %ile 27.6

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.114566.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g17710: unknown protein (HF=2e-1)

Module size 6 genes

NF 0.14

%ile 27.6

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays