Co-expression analysis

Gene ID	PtpAffx.114566.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g17710: unknown protein (HF=2e-1)
Module size	6 genes
NF	0.14
%ile	27.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	87.0	0.92	PtpAffx.114566.1.A1_at	CV254112	hypothetical protein	-	2e-1	At2g17710	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.92	PtpAffx.24700.1.A1_at	CV249721	hypothetical protein	-	8e-2	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.92	PtpAffx.5021.1.S1_at	CK090757	hypothetical protein	-	1e-4	At1g54360	TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.92	PtpAffx.45958.1.A1_at	DN492279	hypothetical protein	-	7e-55	At1g02410	cytochrome c oxidase assembly protein CtaG / Cox11 family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.92	PtpAffx.203818.1.S1_x_at	pmrna7547	hypothetical protein	-	3e-2	At1g12520	ATCCS (COPPER CHAPERONE FOR SOD1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.92	PtpAffx.147674.1.A1_at	CV229116	hypothetical protein	-	3e+0	At1g08710	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	98.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.4	98.2	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
6.8	98.0	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7	85.5	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the maize gene, Zm.4563.1.A1_at, orthologous to the query gene, PtpAffx.114566.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.62	79.8	Zm.4563.1.A1_at	At2g17710	-	-	2e-1	At5g23920	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	75.1	Zm.4164.2.A1_at	At2g17710	-	-	6e+0	At4g19640	ARA7	O.I.	H.G.	S.X.	Please select
0.52	67.3	Zm.9082.2.A1_at	At2g17710	-	-	3e-10	At2g25070	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	ZmAffx.101.1.A1_at	At2g17710	-	-	3e+0	At5g24310	ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.6996.1.A1_at	At2g17710	-	-	8e-1	At2g28671	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.384.1.A1_at	At2g17710	physical impedance induced protein2	-	6e+0	At5g03100	F-box family protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.9135.2.A1_at	At2g17710	versicolorin reductase	-	4e-1	At5g59990	-	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.9791.1.S1_at	At2g17710	hypothetical protein LOC100216896	-	1e-78	At3g52580	40S ribosomal protein S14 (RPS14C)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.9525.1.A1_at	At2g17710	hypothetical protein LOC100274441	-	1e+0	At5g11120	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.4795.1.A1_at	At2g17710	-	-	8e-2	At3g63230	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.16532.2.A1_at	At2g17710	60S ribosomal protein L18a	-	4e-69	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.13759.1.S1_at	At2g17710	-	-	6e-15	At5g63840	RSW3 (RADIAL SWELLING 3)	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.16829.3.S1_at	At2g17710	-	-	4e+0	At5g55240	caleosin-related family protein / embryo-specific protein, putative	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.12235.1.S1_at	At2g17710	-	-	7e+0	At5g62980	dihydroneopterin aldolase, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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