Co-expression analysis

Gene ID	PtpAffx.114566.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g17710: unknown protein (HF=2e-1)
Module size	6 genes
NF	0.14
%ile	27.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	87.0	0.92	PtpAffx.114566.1.A1_at	CV254112	hypothetical protein	-	2e-1	At2g17710	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.92	PtpAffx.24700.1.A1_at	CV249721	hypothetical protein	-	8e-2	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.92	PtpAffx.5021.1.S1_at	CK090757	hypothetical protein	-	1e-4	At1g54360	TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.92	PtpAffx.45958.1.A1_at	DN492279	hypothetical protein	-	7e-55	At1g02410	cytochrome c oxidase assembly protein CtaG / Cox11 family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.92	PtpAffx.203818.1.S1_x_at	pmrna7547	hypothetical protein	-	3e-2	At1g12520	ATCCS (COPPER CHAPERONE FOR SOD1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.92	PtpAffx.147674.1.A1_at	CV229116	hypothetical protein	-	3e+0	At1g08710	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	98.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.4	98.2	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
6.8	98.0	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7	85.5	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the barley gene, Contig18851_at, orthologous to the query gene, PtpAffx.114566.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig18851_at	At2g17710	-	-	4e-1	At1g77830	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig617_x_at	At2g17710	-	-	7e-34	At2g34430	LHB1B1	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig3017_at	At2g17710	oxalate oxidase	-	2e+0	At1g18970	GLP4 (GERMIN-LIKE PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig361_s_at	At2g17710	-	-	9e-8	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.09	7.4	Contig9723_at	At2g17710	-	-	3e+0	At2g24880	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.08	6.5	Contig25066_at	At2g17710	-	-	5e+0	At5g10730	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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