CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.114566.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g17710: unknown protein (HF=2e-1)

Module size 6 genes

NF 0.14

%ile 27.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 87.0 0.92 PtpAffx.114566.1.A1_at CV254112 hypothetical protein - 2e-1 At2g17710 unknown protein O.I. H.G. S.X.
0.40 67.0 0.92 PtpAffx.24700.1.A1_at CV249721 hypothetical protein - 8e-2 At4g13940 MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) O.I. H.G. S.X.
0.17 29.1 0.92 PtpAffx.5021.1.S1_at CK090757 hypothetical protein - 1e-4 At1g54360 TAF6B4 (TBP-ASSOCIATED FACTOR 6B4) O.I. H.G. S.X.
0.14 23.5 0.92 PtpAffx.45958.1.A1_at DN492279 hypothetical protein - 7e-55 At1g02410 cytochrome c oxidase assembly protein CtaG / Cox11 family O.I. H.G. S.X.
0.11 18.1 0.92 PtpAffx.203818.1.S1_x_at pmrna7547 hypothetical protein - 3e-2 At1g12520 ATCCS (COPPER CHAPERONE FOR SOD1) O.I. H.G. S.X.
0.04 6.9 0.92 PtpAffx.147674.1.A1_at CV229116 hypothetical protein - 3e+0 At1g08710 F-box family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.4 98.2 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.4 98.2 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
6.8 98.0 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.6 96.2 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7 85.5 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g17710, orthologous to the query gene, PtpAffx.114566.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.17 10.2 At2g17710 816280 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.15 7.8 At4g08300 826384 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAMF O.I. H.G. S.X.
0.06 1.4 At4g25830 828688 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.05 1.1 At3g10910 820261 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. H.G. S.X.
0.04 0.9 At2g37130 818289 peroxidase 21 (PER21) (P21) (PRXR5) F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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