CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.114358.1.A1_at

Gene name
Homology with Arabidopsis Similar to At2g41430: ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15) (HF=4e-1)

Module size 15 genes

NF 0.12

%ile 24.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 84.9 0.88 PtpAffx.114358.1.A1_at CV262089 - - 4e-1 At2g41430 ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15) O.I. H.G. S.X.
0.36 61.6 0.91 PtpAffx.102710.2.A1_at CV260444 hypothetical protein - 1e+0 At5g53210 SPCH (SPEECHLESS) O.I. H.G. S.X.
0.28 50.5 0.91 PtpAffx.206919.1.S1_at pmrna13737 hypothetical protein - 1e+0 At2g40200 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.28 50.5 0.91 PtpAffx.50094.1.A1_at CV259120 hypothetical protein - 3e-20 At5g64470 unknown protein O.I. H.G. S.X.
0.24 41.8 0.93 PtpAffx.5179.3.S1_a_at CV277722 hypothetical protein - 5e-4 At2g42670 unknown protein O.I. H.G. S.X.
0.22 38.3 0.90 PtpAffx.216100.1.S1_at pmrna30680 hypothetical protein - 9e-12 At4g27390 unknown protein O.I. H.G. S.X.
0.20 34.6 0.91 PtpAffx.111597.1.S1_at CV271927 hypothetical protein - 1e-17 At1g42440 - O.I. H.G. S.X.
0.19 32.7 0.92 PtpAffx.207127.1.S1_s_at pmrna14139 hypothetical protein - 2e-7 At5g10060 - O.I. H.G. S.X.
0.13 21.6 0.91 PtpAffx.1933.1.A1_at CV241786 hypothetical protein - 1e-19 At1g08190 vacuolar assembly protein, putative (VPS41) O.I. H.G. S.X.
0.11 18.1 0.90 PtpAffx.101422.1.A1_at CV265656 hypothetical protein - 2e-1 At2g04066 MATE efflux protein-related O.I. H.G. S.X.
0.09 14.6 0.91 PtpAffx.54639.1.S1_at DN494156 hypothetical protein - 3e-64 At1g22800 methyltransferase O.I. H.G. S.X.
0.08 12.9 0.91 PtpAffx.153471.1.A1_at CV245693 hypothetical protein - 9e-9 At3g55490 - O.I. H.G. S.X.
0.07 11.6 0.92 PtpAffx.88561.1.A1_at CV261483 - - 7e-1 At5g25560 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.06 9.8 0.89 PtpAffx.9539.1.A1_at BI125176 hypothetical protein - 6e-62 At5g20930 TSL (TOUSLED) O.I. H.G. S.X.
0.04 6.9 0.91 PtpAffx.128121.1.A1_at CV227819 hypothetical protein - 5e-1 At3g25750 F-box family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.3 97.7 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.4 94.0 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3 89.8 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1 88.6 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.8 86.4 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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