Co-expression analysis

Gene ID PtpAffx.112555.2.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g15110: phosphatidyl serine synthase family protein (HF=2e-96)
Module size 6 genes
NF 0.52
%ile 82.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.95PtpAffx.112555.2.S1_s_atCV242108hypothetical protein-2e-96At1g15110phosphatidyl serine synthase family proteinO.I.H.G.S.X.
0.6791.10.95PtpAffx.135514.1.S1_atDN498152hypothetical protein-1e-7At5g07910leucine-rich repeat family proteinO.I.H.G.S.X.
0.4369.70.95Ptp.5383.1.S1_atAJ768686hypothetical protein-1e-32At5g22000RHF2A (RING-H2 GROUP F2A)O.I.H.G.S.X.
0.4067.00.95PtpAffx.93050.1.S1_atDN500932hypothetical protein-1e-7At3g48070protein binding / zinc ion bindingO.I.H.G.S.X.
0.4067.00.95PtpAffx.217198.1.S1_atpmrna32362--1e-99At5g22950VPS24.1O.I.H.G.S.X.
0.3559.70.95PtpAffx.99107.3.A1_s_atCV240653hypothetical protein-6e-64At4g19640ARA7O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6791.10.93PtpAffx.212585.1.S1_atpmrna24655hypothetical protein-4e-3At5g24240phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family proteinO.I.H.G.S.X.
0.5582.20.93PtpAffx.205913.1.S1_s_atpmrna11730SET domain protein /// SET domain protein-7e-31At5g42400SDG25 (SET DOMAIN PROTEIN 25)O.I.H.G.S.X.
0.5078.60.92PtpAffx.150396.1.S1_atCN518995hypothetical protein-3e-5At2g26070RTE1 (REVERSION-TO-ETHYLENE SENSITIVITY1)O.I.H.G.S.X.
0.5078.60.94PtpAffx.17880.1.S1_atCV269811hypothetical protein-7e-55At3g53930protein kinase family proteinO.I.H.G.S.X.
0.4369.70.93PtpAffx.30221.3.S1_s_atDN496799hypothetical protein-9e-2At1g64355unknown proteinO.I.H.G.S.X.
0.4369.70.93PtpAffx.161661.1.S1_atBU827309hypothetical protein-2e-30At2g26000zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3863.70.90PtpAffx.203874.1.S1_atpmrna7654hypothetical protein-4e-12At1g28380NSL1 (necrotic spotted lesions 1)O.I.H.G.S.X.
0.3661.60.92PtpAffx.81489.1.S1_atCX184697hypothetical protein-2e-12At3g05970LACS6 (long-chain acyl-CoA synthetase 6)O.I.H.G.S.X.
0.3052.00.91Ptp.5063.1.S1_s_atBU866991hypothetical protein-2e-107At3g16100ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)O.I.H.G.S.X.
0.3052.00.95PtpAffx.158765.2.S1_s_atCF118958hypothetical protein-8e-35At3g52950CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinO.I.H.G.S.X.
0.2950.50.92PtpAffx.202857.1.S1_s_atpmrna5648hypothetical protein /// aminophospholipid ATPase-5e-54At1g72700haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.2950.50.93PtpAffx.215298.1.S1_atpmrna29395hypothetical protein-4e-17At4g30240protein bindingO.I.H.G.S.X.
0.2950.50.93PtpAffx.200568.1.S1_atpmrna1121hypothetical protein-8e-6At1g711806-phosphogluconate dehydrogenase NAD-binding domain-containing proteinO.I.H.G.S.X.
0.2950.50.94PtpAffx.22916.1.A1_atCN520839hypothetical protein-2e-2At5g02290NAKO.I.H.G.S.X.
0.2747.10.92Ptp.1287.1.S1_atDN484332hypothetical protein-7e-87At5g45130RHA1 (RAB HOMOLOG 1)O.I.H.G.S.X.
0.2747.10.95PtpAffx.155946.1.S1_atAI162254hypothetical protein-7e-14At3g54110PUMP1 (PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1)O.I.H.G.S.X.
0.2543.60.93PtpAffx.201507.1.S1_atpmrna2968SET domain protein-8e-37At5g42400SDG25 (SET DOMAIN PROTEIN 25)O.I.H.G.S.X.
0.2543.60.93PtpAffx.202668.1.S1_atpmrna5323hypothetical protein-5e+0At5g01580OSH1 (OAS HIGH ACCUMULATION 1)O.I.H.G.S.X.
0.2543.60.94PtpAffx.204892.1.S1_atpmrna9663hypothetical protein-2e-24At5g12430DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.2543.60.95PtpAffx.212730.1.S1_atpmrna24902hypothetical protein-2e-12At3g47940DNAJ heat shock protein, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.794.7GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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