Co-expression analysis

Gene ID	PtpAffx.11032.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g55440: TPI (TRIOSEPHOSPHATE ISOMERASE) (HF=8e-71)
Module size	7 genes
NF	0.36
%ile	62.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.93	PtpAffx.11032.1.S1_at	CV283925	hypothetical protein	-	8e-71	At3g55440	TPI (TRIOSEPHOSPHATE ISOMERASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	PtpAffx.5608.2.S1_a_at	CV131491	hypothetical protein	-	2e-11	At2g18770	signal recognition particle binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	Ptp.1398.1.S1_s_at	DN488079	hypothetical protein	-	1e-75	At3g55440	TPI (TRIOSEPHOSPHATE ISOMERASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.94	PtpAffx.27220.1.A1_at	CV260863	hypothetical protein	-	1e-32	At3g01910	SOX (SULFITE OXIDASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.95	Ptp.4489.1.S1_at	CV242965	hypothetical protein	-	2e+0	At3g51890	protein binding / structural molecule	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.93	Ptp.5608.1.S1_s_at	CF229069	hypothetical protein	-	2e-6	At1g06200	serine-type peptidase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.93	Ptp.5447.1.S1_at	CK099861	hypothetical protein	-	1e-4	At3g59090	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.3	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.7	97.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.3	97.7	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.0	96.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7	85.5	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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