Co-expression analysis

Gene ID	PtpAffx.110023.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g70190: ribosomal protein L12 family protein (HF=7e-2)
Module size	9 genes
NF	0.03
%ile	7.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.81	PtpAffx.110023.1.A1_at	CK095393	-	-	7e-2	At1g70190	ribosomal protein L12 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.80	PtpAffx.48308.1.A1_at	DN488462	-	-	1e+0	At1g78220	GRF13	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.79	PtpAffx.216641.1.S1_at	pmrna31558	hypothetical protein	-	5e-1	At3g13700	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.79	PtpAffx.219232.1.S1_at	pmrna35089	hypothetical protein	-	5e+0	At3g21465	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.82	PtpAffx.208071.1.S1_at	pmrna16029	hypothetical protein	-	3e+0	At4g32930	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.81	PtpAffx.205589.1.S1_at	pmrna11038	hypothetical protein	-	6e-3	At3g22970	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.81	PtpAffx.223886.1.S1_at	pmrna42108	hypothetical protein	-	4e+0	At4g21860	MSRB2 (methionine sulfoxide reductase B 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.79	PtpAffx.225386.1.S1_x_at	pmrna44700	-	-	4e-9	At5g45160	root hair defective 3 GTP-binding (RHD3) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.79	PtpAffx.220544.1.S1_at	pmrna36948	hypothetical protein	-	9e-2	At2g23310	ATRER1C1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.1	98.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
7.5	98.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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