Co-expression analysis

Gene ID PtpAffx.109937.1.A1_at
Gene name NAC domain protein, IPR003441
Homology with ArabidopsisSimilar to At4g24700: unknown protein (HF=4e-1)
Module size 6 genes
NF 0.42
%ile 70.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8096.00.90PtpAffx.109937.1.A1_atCK097441NAC domain protein, IPR003441-4e-1At4g24700unknown proteinO.I.H.G.S.X.
0.6086.00.90PtpAffx.811.1.S1_atCK097682hypothetical protein-1e-9At3g01680unknown proteinO.I.H.G.S.X.
0.6086.00.90PtpAffx.811.1.S1_x_atCK097682hypothetical protein-1e-9At3g01680unknown proteinO.I.H.G.S.X.
0.5582.20.90PtpAffx.811.1.S1_s_atCK097682hypothetical protein-1e-9At3g01680unknown proteinO.I.H.G.S.X.
0.2136.50.88Ptp.186.1.A1_s_atCK087302--7e+0At3g56270unknown proteinO.I.H.G.S.X.
0.1525.30.88PtpAffx.45735.1.S1_atCV230334hypothetical protein-5e-1At1g066202-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.697.2GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.996.5GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage