Co-expression analysis

Gene ID PtpAffx.108986.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g54800: GPT1 (HF=3e-38)
Module size 6 genes
NF 0.70
%ile 96.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.94PtpAffx.108986.1.S1_atAJ777271hypothetical protein-3e-38At5g54800GPT1O.I.H.G.S.X.
0.6791.10.95PtpAffx.12443.4.A1_s_atCV240107cytochrome P450 cinnamate 4-hydroxylase-7e-24At2g30490C4H (CINNAMATE-4-HYDROXYLASE)O.I.H.G.S.X.
0.6791.10.95Ptp.2573.1.S1_atCV237401hypothetical protein-1e-95At5g37600ATGSR1O.I.H.G.S.X.
0.6086.00.95Ptp.3608.1.S1_s_atAJ224895.1trans-caffeoyl-coa 3-o-methyltransferase-6e-78At4g34050caffeoyl-CoA 3-O-methyltransferase, putativeO.I.H.G.S.X.
0.5078.60.94Ptp.3043.1.S1_s_atAF041049.14-Coumarate:CoA ligase-3e-13At1g516804CL1 (4-COUMARATE:COA LIGASE 1)O.I.H.G.S.X.
0.4067.00.94PtpAffx.211196.1.S1_x_atpmrna22005hypothetical protein-1e-116At5g54800GPT1O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.791.8GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327358Populus balsamifera_20071015_Seedling_continuous_light_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.785.5GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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