Co-expression analysis

Gene ID	PtpAffx.108515.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g19240: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.10
%ile	21.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.33	57.5	0.87	PtpAffx.108515.1.A1_at	CV237662	-	-	3e+0	At5g19240	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.88	PtpAffx.200282.1.S1_at	pmrna560	hypothetical protein	-	6e-1	At2g25840	OVA4 (ovule abortion 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.88	PtpAffx.3423.1.A1_at	DN491762	hypothetical protein	-	2e-14	At2g40930	UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.89	PtpAffx.215976.1.S1_at	pmrna30470	hypothetical protein	-	4e-25	At3g07330	ATCSLC6 (CELLULOSE-SYNTHASE LIKE C6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.87	PtpAffx.134623.1.A1_at	CV228876	-	-	2e+0	At5g39870	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.87	PtpAffx.210704.1.S1_at	pmrna20996	hypothetical protein	-	1e+0	At5g62740	band 7 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	95.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the barley gene, Contig11062_at, orthologous to the query gene, PtpAffx.108515.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	Contig11062_at	At5g19240	-	-	1e+0	At2g13660	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig9903_at	At5g19240	-	-	1e-2	At3g20500	PAP18 (PURPLE ACID PHOSPHATASE 18)	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig9666_at	At5g19240	-	-	3e-1	At1g44830	AP2 domain-containing transcription factor TINY, putative	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig4160_at	At5g19240	-	-	7e-17	At4g04950	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig8176_at	At5g19240	-	-	8e-32	At1g05350	thiF family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig7916_at	At5g19240	-	-	5e-1	At2g21100	disease resistance-responsive protein-related / dirigent protein-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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