CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.108515.1.A1_at

Gene name
Homology with Arabidopsis Similar to At5g19240: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.10

%ile 21.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.33 57.5 0.87 PtpAffx.108515.1.A1_at CV237662 - - 3e+0 At5g19240 unknown protein O.I. H.G. S.X.
0.23 40.5 0.88 PtpAffx.200282.1.S1_at pmrna560 hypothetical protein - 6e-1 At2g25840 OVA4 (ovule abortion 4) O.I. H.G. S.X.
0.23 40.5 0.88 PtpAffx.3423.1.A1_at DN491762 hypothetical protein - 2e-14 At2g40930 UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5) O.I. H.G. S.X.
0.17 29.1 0.89 PtpAffx.215976.1.S1_at pmrna30470 hypothetical protein - 4e-25 At3g07330 ATCSLC6 (CELLULOSE-SYNTHASE LIKE C6) O.I. H.G. S.X.
0.08 12.9 0.87 PtpAffx.134623.1.A1_at CV228876 - - 2e+0 At5g39870 unknown protein O.I. H.G. S.X.
0.03 5.2 0.87 PtpAffx.210704.1.S1_at pmrna20996 hypothetical protein - 1e+0 At5g62740 band 7 family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.3 95.8 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7 91.8 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3 89.8 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.31177.1.S1_at, orthologous to the query gene, PtpAffx.108515.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 93.4 GmaAffx.31177.1.S1_at At5g19240 - - 6e+0 At5g08565 positive transcription elongation factor/ zinc ion binding O.I. H.G. S.X.
0.55 76.3 Gma.3910.1.S1_at At5g19240 - - 5e-12 At3g02190 60S ribosomal protein L39 (RPL39B) O.I. H.G. S.X.
0.40 57.1 GmaAffx.8945.1.S1_at At5g19240 - - 3e+0 At1g19010 unknown protein O.I. H.G. S.X.
0.36 50.8 Gma.18058.3.S1_at At5g19240 - - 7e-4 At5g52470 FIB1 (FIBRILLARIN 1) O.I. H.G. S.X.
0.31 42.2 Gma.5843.1.S1_at At5g19240 - - 2e-22 At3g12390 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative O.I. H.G. S.X.
0.21 26.6 Gma.5843.1.S1_x_at At5g19240 - - 2e-22 At3g12390 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative O.I. H.G. S.X.
0.21 26.6 Gma.17555.1.S1_x_at At5g19240 - - 2e-15 At5g46430 60S ribosomal protein L32 (RPL32B) O.I. H.G. S.X.
0.13 16.3 GmaAffx.42109.1.S1_at At5g19240 - - 6e-1 At1g50980 F-box family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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