Co-expression analysis

Gene ID	PtpAffx.1066.10.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g05010: clathrin adaptor complexes medium subunit-related (HF=2e-34)
Module size	6 genes
NF	0.73
%ile	97.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.98	PtpAffx.1066.10.S1_a_at	CX178751	hypothetical protein	-	2e-34	At5g05010	clathrin adaptor complexes medium subunit-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.97	Ptp.3085.1.S1_at	CV254346	hypothetical protein	-	3e-36	At5g61790	calnexin 1 (CNX1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.98	PtpAffx.162111.1.S1_at	CF232559	hypothetical protein	-	3e-60	At3g11130	clathrin heavy chain, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.97	PtpAffx.124284.1.S1_s_at	CK113924	hypothetical protein	-	7e-15	At3g16270	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.97	Ptp.6424.1.S1_at	DN493610	hypothetical protein	-	1e-7	At3g24160	PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.98	PtpAffx.3847.4.A1_s_at	BU820394	hypothetical protein	-	2e-15	At1g13320	PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	93.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage