Co-expression analysis

Gene ID	PtpAffx.10586.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g80840: WRKY40 (HF=1e-26)
Module size	8 genes
NF	0.55
%ile	86.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	0.92	PtpAffx.10586.1.S1_at	BP930543	hypothetical protein	-	1e-26	At1g80840	WRKY40	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.93	PtpAffx.1269.3.S1_at	CV262340	-	-	2e+0	At1g21830	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.94	Ptp.6364.1.S1_at	CV246052	hypothetical protein	-	1e-1	At3g27160	GHS1 (GLUCOSE HYPERSENSITIVE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.93	PtpAffx.204984.1.S1_at	pmrna9872	hypothetical protein	-	9e-1	At1g69210	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.92	PtpAffx.206422.1.S1_s_at	pmrna12755	hypothetical protein	-	1e-2	At2g35930	PUB23 (PLANT U-BOX 23)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.93	PtpAffx.205910.1.S1_at	pmrna11721	hypothetical protein	-	4e-3	At3g28007	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.93	PtpAffx.201916.1.S1_at	pmrna3817	hypothetical protein	-	5e-7	At1g22210	trehalose-6-phosphate phosphatase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.93	Ptp.4130.1.S1_s_at	CX167925	hypothetical protein	-	3e-1	At5g39530	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	98.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.2	93.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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