Co-expression analysis

Gene ID PtpAffx.10586.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g80840: WRKY40 (HF=1e-26)
Module size 8 genes
NF 0.55
%ile 86.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5683.90.92PtpAffx.10586.1.S1_atBP930543hypothetical protein-1e-26At1g80840WRKY40O.I.H.G.S.X.
0.6791.10.93PtpAffx.1269.3.S1_atCV262340--2e+0At1g21830unknown proteinO.I.H.G.S.X.
0.6791.10.94Ptp.6364.1.S1_atCV246052hypothetical protein-1e-1At3g27160GHS1 (GLUCOSE HYPERSENSITIVE 1)O.I.H.G.S.X.
0.6388.10.93PtpAffx.204984.1.S1_atpmrna9872hypothetical protein-9e-1At1g69210unknown proteinO.I.H.G.S.X.
0.4875.40.92PtpAffx.206422.1.S1_s_atpmrna12755hypothetical protein-1e-2At2g35930PUB23 (PLANT U-BOX 23)O.I.H.G.S.X.
0.4774.60.93PtpAffx.205910.1.S1_atpmrna11721hypothetical protein-4e-3At3g28007nodulin MtN3 family proteinO.I.H.G.S.X.
0.4268.60.93PtpAffx.201916.1.S1_atpmrna3817hypothetical protein-5e-7At1g22210trehalose-6-phosphate phosphatase, putativeO.I.H.G.S.X.
0.3964.60.93Ptp.4130.1.S1_s_atCX167925hypothetical protein-3e-1At5g39530unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.298.1GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.293.5GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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