Co-expression analysis

Gene ID	PtpAffx.104325.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g16620: ATTOC120 (HF=3e-85)
Module size	6 genes
NF	0.21
%ile	39.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.94	PtpAffx.104325.1.S1_at	CA929650	hypothetical protein	-	3e-85	At3g16620	ATTOC120	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.94	PtpAffx.111008.1.S1_at	BU886443	hypothetical protein	-	2e-9	At2g15560	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	PtpAffx.207569.1.S1_at	pmrna15026	hypothetical protein	-	1e+0	At4g03180	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.94	PtpAffx.113391.1.S1_at	BI129751	hypothetical protein	-	4e+0	At4g19003	VPS25	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.95	PtpAffx.86064.1.S1_at	CV279515	hypothetical protein	-	3e-24	At5g65720	NFS1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.94	Ptp.5256.2.S1_s_at	DN493311	hypothetical protein	-	5e-46	At1g20920	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	94.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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