Co-expression analysis

Gene ID	PtpAffx.104205.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g59690: histone H4 (HF=1e-25)
Module size	6 genes
NF	0.04
%ile	8.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.43	69.7	0.85	PtpAffx.104205.1.A1_at	CV277856	-	-	1e-25	At5g59690	histone H4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.81	PtpAffx.75907.1.A1_at	CV252889	heavy metal ATPase	-	6e-12	At5g44790	RAN1 (RESPONSIVE-TO-ANTAGONIST 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.84	PtpAffx.993.1.S1_at	AJ767562	hypothetical protein	-	9e-101	At3g04400	emb2171 (embryo defective 2171)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.81	PtpAffx.58520.1.S1_at	CK091727	hypothetical protein	-	1e-18	At3g16630	KINESIN-13A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.84	PtpAffx.249.163.A1_at	CV277998	-	-	2e+0	At1g16510	auxin-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.82	PtpAffx.127990.1.A1_at	CV236342	-	-	2e-2	At2g27720	60S acidic ribosomal protein P2 (RPP2A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.0	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3	93.7	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0	92.9	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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