Co-expression analysis

Gene ID	PtpAffx.103932.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g23880: CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) (HF=5e-20)
Module size	8 genes
NF	0.25
%ile	46.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.95	PtpAffx.103932.1.S1_at	CX175756	-	-	5e-20	At5g23880	CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.96	PtpAffx.204071.1.S1_s_at	pmrna8037	hypothetical protein	-	4e-3	At5g15980	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.96	PtpAffx.219794.1.S1_at	pmrna35894	hypothetical protein	-	2e+0	At3g62370	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.96	PtpAffx.132417.1.A1_at	BP934402	hypothetical protein	-	2e-5	At1g65030	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.97	PtpAffx.222315.1.S1_at	pmrna39641	hypothetical protein	-	7e-40	At1g06720	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.96	PtpAffx.114108.1.A1_s_at	CV270939	-	-	2e-3	At3g06530	binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.96	Ptp.2042.1.S1_at	CK093240	-	-	4e-33	At5g06460	ATUBA2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.96	PtpAffx.152869.1.A1_at	CV281294	hypothetical protein	-	5e-1	At5g41430	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	97.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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