Co-expression analysis

Gene ID	PtpAffx.102710.2.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g53210: SPCH (SPEECHLESS) (HF=1e+0)
Module size	24 genes
NF	0.21
%ile	38.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.3	0.91	PtpAffx.102710.2.A1_at	CV260444	hypothetical protein	-	1e+0	At5g53210	SPCH (SPEECHLESS)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.92	PtpAffx.5179.3.S1_a_at	CV277722	hypothetical protein	-	5e-4	At2g42670	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.92	PtpAffx.1933.1.A1_at	CV241786	hypothetical protein	-	1e-19	At1g08190	vacuolar assembly protein, putative (VPS41)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.92	PtpAffx.50094.1.A1_at	CV259120	hypothetical protein	-	3e-20	At5g64470	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.91	PtpAffx.11404.1.S1_at	CV267147	hypothetical protein	-	7e-26	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.92	PtpAffx.153471.1.A1_at	CV245693	hypothetical protein	-	9e-9	At3g55490	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.92	PtpAffx.69575.1.A1_at	CV253075	-	-	5e-12	At5g09310	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.92	PtpAffx.207127.1.S1_s_at	pmrna14139	hypothetical protein	-	2e-7	At5g10060	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.95	PtpAffx.207201.1.S1_at	pmrna14295	hypothetical protein	-	3e-5	At3g19780	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.94	PtpAffx.88561.1.A1_at	CV261483	-	-	7e-1	At5g25560	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.94	PtpAffx.9325.3.A1_a_at	CV261752	hypothetical protein	-	1e-1	At1g76300	SmD3 (snRNP core protein SmD3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.94	PtpAffx.25622.1.S1_at	CV238522	hypothetical protein	-	3e-43	At5g47760	ATPGLP2 (ARABIDOPSIS THALIANA 2-PHOSPHOGLYCOLATE PHOSPHATASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.94	PtpAffx.104237.1.A1_at	CV254710	-	-	4e-8	At1g72990	BGAL17 (beta-galactosidase 17)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.94	PtpAffx.202365.1.S1_at	pmrna4747	hypothetical protein	-	2e+0	At4g30030	aspartyl protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.93	PtpAffx.147021.1.A1_at	CV247530	hypothetical protein	-	6e-9	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.94	PtpAffx.206181.1.S1_at	pmrna12272	hypothetical protein	-	2e-18	At3g28430	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.91	PtpAffx.24972.1.A1_s_at	CV239314	hypothetical protein	-	7e-9	At4g02680	EOL1 (ETO1-LIKE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.92	PtpAffx.128121.1.A1_at	CV227819	hypothetical protein	-	5e-1	At3g25750	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.93	PtpAffx.88412.1.A1_at	CV267837	hypothetical protein	-	1e+0	At5g07520	GRP18 (GLYCINE-RICH PROTEIN 18)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.92	PtpAffx.80093.1.S1_s_at	BU890798	hypothetical protein	-	6e-9	At4g32360	NADP adrenodoxin-like ferredoxin reductase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.95	PtpAffx.4127.1.A1_s_at	CV269698	-	-	1e-3	At5g38840	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.92	PtpAffx.56522.1.A1_at	CV262002	hypothetical protein	-	6e-7	At5g02850	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.92	PtpAffx.52935.1.A1_a_at	CV229197	hypothetical protein	-	2e-9	At1g17720	ATB BETA	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.92	PtpAffx.147399.1.A1_at	CV239170	hypothetical protein	-	5e+0	At4g32605	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	94.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.4	82.3	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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