Co-expression analysis

Gene ID	PtpAffx.102317.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g39540: gibberellin-regulated family protein (HF=1e+0)
Module size	18 genes
NF	0.40
%ile	67.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	94.3	0.93	PtpAffx.102317.1.A1_at	CV229701	hypothetical protein	-	1e+0	At2g39540	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.94	PtpAffx.204774.1.S1_at	pmrna9399	hypothetical protein	-	7e-9	At4g13160	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.54	80.8	0.94	PtpAffx.200356.1.S1_at	pmrna714	hypothetical protein	-	1e-21	At5g10560	glycosyl hydrolase family 3 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.94	PtpAffx.723.2.S1_a_at	CV277361	hypothetical protein	-	2e-34	At5g13720	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	Ptp.2741.1.S1_s_at	DN490824	hypothetical protein	-	1e-94	At1g21640	NADK2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	PtpAffx.31479.1.S1_a_at	AJ767275	hypothetical protein	-	7e-3	At1g11910	aspartyl protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.95	Ptp.6060.1.S1_at	DN490099	hypothetical protein	-	9e-161	At1g06430	FTSH8	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.94	PtpAffx.204090.1.S1_at	pmrna8074	hypothetical protein	-	5e-17	At5g39940	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.93	PtpAffx.22296.1.S1_at	CV264064	hypothetical protein	-	7e-32	At2g24820	TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.94	PtpAffx.121212.1.A1_at	CV249010	-	-	3e-5	At1g30570	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.95	PtpAffx.58699.1.A1_s_at	CK094569	hypothetical protein	-	2e-20	At3g26580	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.94	PtpAffx.213055.1.S1_at	pmrna25547	hypothetical protein	-	2e-24	At4g25450	ATNAP8	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.95	PtpAffx.200279.1.S1_s_at	pmrna555	hypothetical protein	-	2e-50	At5g47860	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.94	PtpAffx.214769.1.S1_s_at	pmrna28611	hypothetical protein	-	3e-41	At3g58140	phenylalanyl-tRNA synthetase class IIc family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.96	PtpAffx.210909.1.S1_s_at	pmrna21432	hypothetical protein	-	1e-86	At3g05350	aminopeptidase/ hydrolase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.96	PtpAffx.211281.1.S1_at	pmrna22128	hypothetical protein	-	2e-1	At5g57920	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.96	Ptp.6178.1.S1_s_at	CV227973	hypothetical protein	-	6e-31	At1g21065	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.94	Ptp.2147.2.S1_s_at	CK093224	glutaredoxin S14	-	2e-9	At3g54900	CXIP1 (CAX INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	97.6	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.5	83.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage