Co-expression analysis

Gene ID	PtpAffx.102055.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g46560: TIM9 (HF=4e+0)
Module size	6 genes
NF	0.21
%ile	39.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.82	PtpAffx.102055.1.A1_at	CV243889	-	-	4e+0	At3g46560	TIM9	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.82	PtpAffx.224920.1.S1_a_at	pmrna43847	BED finger-nbs-lrr resistance protein	-	6e-1	At1g62630	disease resistance protein (CC-NBS-LRR class), putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.81	Ptp.4423.1.S1_at	BU830209	hypothetical protein	-	8e-2	At5g40250	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.83	PtpAffx.216901.1.S1_x_at	pmrna31955	hypothetical protein	-	9e-12	At1g13680	phospholipase C/ phosphoric diester hydrolase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.81	PtpAffx.223915.1.S1_at	pmrna42137	hypothetical protein	-	6e-1	At3g63420	AGG1 (Arabidopsis Ggamma-subunit 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.81	PtpAffx.205373.1.S1_at	pmrna10643	-	-	8e-1	At2g21480	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	95.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0	92.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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