Co-expression analysis

Gene ID PtpAffx.102038.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g54190: PORA (HF=4e-75)
Module size 16 genes
NF 0.43
%ile 72.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7493.80.79PtpAffx.102038.1.A1_atCV240356hypothetical protein-4e-75At5g54190PORAO.I.H.G.S.X.
0.7794.90.91Ptp.6759.1.S1_atCV250414--8e-6At3g54210ribosomal protein L17 family proteinO.I.H.G.S.X.
0.6791.10.88PtpAffx.63548.1.A1_atCV236573hypothetical protein-2e+0At2g36355unknown proteinO.I.H.G.S.X.
0.6588.60.87PtpAffx.206849.1.S1_atpmrna13601hypothetical protein-1e-40At4g31780MGD1 (MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 1)O.I.H.G.S.X.
0.5582.20.88PtpAffx.4760.1.A1_atCV275742bile acid:Na+ symporter family protein-3e+0At5g53040RWP-RK domain-containing proteinO.I.H.G.S.X.
0.5380.50.87PtpAffx.31540.1.S1_atCV257988hypothetical protein-1e-14At5g18230transcription regulator NOT2/NOT3/NOT5 family proteinO.I.H.G.S.X.
0.4369.70.88PtpAffx.120846.1.A1_atCV254082--2e-15At1g26770ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)O.I.H.G.S.X.
0.4268.60.87PtpAffx.1229.1.S1_atAJ774251hypothetical protein-1e-2At5g24780VSP1 (VEGETATIVE STORAGE PROTEIN 1)O.I.H.G.S.X.
0.4067.00.89PtpAffx.37281.1.A1_atCV257908hypothetical protein-3e+0At4g33465SCRL22 (SCR-Like 22)O.I.H.G.S.X.
0.3964.60.87Ptp.2300.1.A1_atCV240007hypothetical protein-2e-25At3g24430HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101)O.I.H.G.S.X.
0.3863.70.90PtpAffx.79770.1.A1_atCV282691--2e+0At5g17770ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)O.I.H.G.S.X.
0.2950.50.90PtpAffx.249.844.S1_atCV274091hypothetical protein-1e+0At1g27510-O.I.H.G.S.X.
0.2950.50.90PtpAffx.9435.1.S1_atDN503461--2e-1At1g72880acid phosphatase survival protein SurE, putativeO.I.H.G.S.X.
0.2950.50.85PtpAffx.217071.1.S1_atpmrna32206hypothetical protein-1e-30At4g15802-O.I.H.G.S.X.
0.2340.50.89PtpAffx.105744.3.A1_atCV275603hypothetical protein-8e-27At5g20840phosphoinositide phosphatase family proteinO.I.H.G.S.X.
0.2238.30.87PtpAffx.200625.1.S1_atpmrna1218hypothetical protein-3e-23At1g79850RPS17 (RIBOSOMAL PROTEIN S17)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.694.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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