Co-expression analysis

Gene ID	PtpAffx.102038.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g54190: PORA (HF=4e-75)
Module size	16 genes
NF	0.43
%ile	72.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	93.8	0.79	PtpAffx.102038.1.A1_at	CV240356	hypothetical protein	-	4e-75	At5g54190	PORA	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.91	Ptp.6759.1.S1_at	CV250414	-	-	8e-6	At3g54210	ribosomal protein L17 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.88	PtpAffx.63548.1.A1_at	CV236573	hypothetical protein	-	2e+0	At2g36355	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.65	88.6	0.87	PtpAffx.206849.1.S1_at	pmrna13601	hypothetical protein	-	1e-40	At4g31780	MGD1 (MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.88	PtpAffx.4760.1.A1_at	CV275742	bile acid:Na+ symporter family protein	-	3e+0	At5g53040	RWP-RK domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.87	PtpAffx.31540.1.S1_at	CV257988	hypothetical protein	-	1e-14	At5g18230	transcription regulator NOT2/NOT3/NOT5 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.88	PtpAffx.120846.1.A1_at	CV254082	-	-	2e-15	At1g26770	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.87	PtpAffx.1229.1.S1_at	AJ774251	hypothetical protein	-	1e-2	At5g24780	VSP1 (VEGETATIVE STORAGE PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.89	PtpAffx.37281.1.A1_at	CV257908	hypothetical protein	-	3e+0	At4g33465	SCRL22 (SCR-Like 22)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.87	Ptp.2300.1.A1_at	CV240007	hypothetical protein	-	2e-25	At3g24430	HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.90	PtpAffx.79770.1.A1_at	CV282691	-	-	2e+0	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.90	PtpAffx.249.844.S1_at	CV274091	hypothetical protein	-	1e+0	At1g27510	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.90	PtpAffx.9435.1.S1_at	DN503461	-	-	2e-1	At1g72880	acid phosphatase survival protein SurE, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.85	PtpAffx.217071.1.S1_at	pmrna32206	hypothetical protein	-	1e-30	At4g15802	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.89	PtpAffx.105744.3.A1_at	CV275603	hypothetical protein	-	8e-27	At5g20840	phosphoinositide phosphatase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.87	PtpAffx.200625.1.S1_at	pmrna1218	hypothetical protein	-	3e-23	At1g79850	RPS17 (RIBOSOMAL PROTEIN S17)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	94.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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