Co-expression analysis

Gene ID	PtpAffx.101268.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g39700: heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related (HF=4e-7)
Module size	13 genes
NF	0.16
%ile	31.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	88.4	0.88	PtpAffx.101268.1.A1_at	CV257146	-	-	4e-7	At4g39700	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.90	Ptp.7732.1.S1_at	CV262887	hypothetical protein	-	2e+0	At1g07660	histone H4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.94	Ptp.8036.1.S1_at	DN487883	hypothetical protein	-	2e-56	At1g01950	armadillo/beta-catenin repeat family protein / kinesin motor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.90	PtpAffx.36859.1.A1_at	CV130787	hypothetical protein	-	5e-4	At1g76160	sks5 (SKU5 Similar 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.90	PtpAffx.216129.1.S1_s_at	pmrna30721	hypothetical protein	-	2e+0	At3g44760	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.92	PtpAffx.56323.1.A1_at	CV269479	hypothetical protein	-	1e+0	At2g18670	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.90	PtpAffx.205977.1.S1_at	pmrna11849	hypothetical protein	-	4e-6	At1g61380	SD1-29 (S-DOMAIN-1 29)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.90	PtpAffx.36016.1.S1_at	CV246616	hypothetical protein	-	4e-8	At3g55310	binding / catalytic/ oxidoreductase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.90	Ptp.2279.1.A1_at	CK088032	cinnamoyl CoA reductase-like protein	-	1e+0	At1g09500	cinnamyl-alcohol dehydrogenase family / CAD family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.90	PtpAffx.213986.1.S1_s_at	pmrna27253	hypothetical protein	-	6e-4	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.91	PtpAffx.200694.1.S1_at	pmrna1342	hypothetical protein	-	1e-6	At1g76370	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.91	PtpAffx.71009.1.A1_at	CV235168	hypothetical protein	-	1e-7	At3g60320	DNA binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.90	PtpAffx.2725.1.A1_at	CV239343	hypothetical protein	-	4e-175	At5g52920	PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	93.2	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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