Co-expression analysis

Gene ID	PtpAffx.10087.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g36310: URH1 (URIDINE-RIBOHYDROLASE 1) (HF=1e-13)
Module size	6 genes
NF	0.54
%ile	84.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.94	PtpAffx.10087.1.A1_at	CV259549	hypothetical protein	-	1e-13	At2g36310	URH1 (URIDINE-RIBOHYDROLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.95	PtpAffx.156340.1.S1_at	CX657667	hypothetical protein	-	1e+0	At2g26520	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.95	PtpAffx.221308.1.S1_at	pmrna38101	hypothetical protein	-	1e-21	At1g72000	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	Ptp.5821.1.S1_at	CV240646	glutathione peroxidase	-	6e-28	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	PtpAffx.5844.1.S1_at	CX174548	hypothetical protein	-	9e-5	At1g68680	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.95	Ptp.3867.1.S1_s_at	CV243174	hypothetical protein	-	1e-97	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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