CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.987.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g54420: ATEP3 (HF=5e-29)

Module size 6 genes

NF 0.52

%ile 82.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.95 Ptp.987.1.S1_at BU895364 - - 5e-29 At3g54420 ATEP3 O.I. H.G. S.X.
0.67 91.1 0.95 PtpAffx.57544.1.A1_at CV266909 - - 3e-1 At3g07920 translation initiation factor O.I. H.G. S.X.
0.50 78.6 0.95 Ptp.6077.1.S1_s_at BI122891 hypothetical protein - 1e+0 At4g21920 unknown protein O.I. H.G. S.X.
0.36 61.6 0.95 Ptp.7181.1.S1_at DN488307 hypothetical protein - 2e-6 At1g49570 peroxidase, putative O.I. H.G. S.X.
0.36 61.6 0.96 PtpAffx.225157.1.S1_at pmrna44294 hypothetical protein - 1e-13 At1g14550 anionic peroxidase, putative O.I. H.G. S.X.
0.35 59.7 0.94 PtpAffx.200248.1.S1_at pmrna481 hypothetical protein - 3e-7 At3g43740 leucine-rich repeat family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.87	PtpAffx.249.187.S1_at	BP933230	-	-	5e-5	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	O.I.	H.G.	S.X.
0.50	78.6	0.95	Ptp.2226.1.S1_at	CK089488	hypothetical protein	-	3e-3	At1g64160	disease resistance-responsive family protein / dirigent family protein	O.I.	H.G.	S.X.
0.40	67.0	0.94	Ptp.3568.1.S1_at	DN493064	hypothetical protein	-	8e-16	At4g24290	-	O.I.	H.G.	S.X.
0.40	67.0	0.96	PtpAffx.204828.1.S1_at	pmrna9522	-	-	2e-1	At4g15393	CYP702A5	O.I.	H.G.	S.X.
0.33	57.5	0.93	PtpAffx.162546.1.A1_at	CV272261	hypothetical protein	-	1e-3	At5g52600	AtMYB82 (myb domain protein 82)	O.I.	H.G.	S.X.
0.32	55.2	0.94	PtpAffx.765.1.A1_at	CV276457	hypothetical protein	-	3e-16	At3g04520	THA2 (Threonine Aldolase 2)	O.I.	H.G.	S.X.
0.31	53.7	0.93	PtpAffx.206712.1.S1_at	pmrna13321	hypothetical protein	-	7e-122	At5g25880	ATNADP-ME3 (NADP-malic enzyme 3)	O.I.	H.G.	S.X.
0.29	50.5	0.87	PtpAffx.208829.1.S1_at	pmrna17508	hypothetical protein	-	8e+0	At5g23035	-	O.I.	H.G.	S.X.
0.29	50.5	0.91	PtpAffx.158527.1.S1_at	CA825767	hypothetical protein	-	6e+0	At4g18501	unknown protein	O.I.	H.G.	S.X.
0.29	50.5	0.93	PtpAffx.32930.1.A1_at	CK095139	hypothetical protein	-	2e-1	At1g14185	glucose-methanol-choline (GMC) oxidoreductase family protein	O.I.	H.G.	S.X.
0.29	50.5	0.95	Ptp.6340.1.S1_at	BU888207	hypothetical protein	-	2e-2	At5g59000	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.25	43.6	0.88	PtpAffx.24794.3.A1_at	CV266160	-	-	3e+0	At3g46380	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.89	PtpAffx.224796.1.S1_s_at	pmrna43650	hypothetical protein	-	5e-5	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	O.I.	H.G.	S.X.
0.25	43.6	0.95	PtpAffx.130922.1.S1_s_at	AJ773860	-	-	5e-6	At1g66950	PDR11 (PLEIOTROPIC DRUG RESISTANCE 11)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.2 96.8 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.2 95.6 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.1 95.5 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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