Co-expression analysis

Gene ID	Ptp.987.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g54420: ATEP3 (HF=5e-29)
Module size	6 genes
NF	0.52
%ile	82.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.95	Ptp.987.1.S1_at	BU895364	-	-	5e-29	At3g54420	ATEP3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.57544.1.A1_at	CV266909	-	-	3e-1	At3g07920	translation initiation factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	Ptp.6077.1.S1_s_at	BI122891	hypothetical protein	-	1e+0	At4g21920	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	Ptp.7181.1.S1_at	DN488307	hypothetical protein	-	2e-6	At1g49570	peroxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.96	PtpAffx.225157.1.S1_at	pmrna44294	hypothetical protein	-	1e-13	At1g14550	anionic peroxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.94	PtpAffx.200248.1.S1_at	pmrna481	hypothetical protein	-	3e-7	At3g43740	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.8	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1613871_at, orthologous to the query gene, Ptp.987.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	88.3	1613871_at	At3g54420	hypothetical protein LOC100256098	-	8e-6	At3g54420	ATEP3	O.I.	H.G.	S.X.	Please select
0.75	91.3	1616445_at	At3g54420	hypothetical protein LOC100262839	-	1e+0	At5g67060	HEC1 (HECATE 1)	O.I.	H.G.	S.X.	Please select
0.74	91.0	1612722_at	At3g54420	hypothetical protein LOC100264158	-	2e+0	At4g18100	60S ribosomal protein L32 (RPL32A)	O.I.	H.G.	S.X.	Please select
0.74	91.0	1608009_s_at	At3g54420	hypothetical protein LOC100254891 /// similar to Stilbene synthase 2 /// stilbene synthase 2	-	7e-1	At1g30300	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	90.8	1611190_s_at	At3g54420	stilbene synthase /// stilbene synthase /// hypothetical protein LOC100252908 /// resveratrol synthase	-	2e+0	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.	Please select
0.73	90.8	1609697_at	At3g54420	Stilbene synthase 4	-	6e-6	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.	Please select
0.73	90.8	1610824_s_at	At3g54420	stilbene synthase /// hypothetical protein LOC100254891 /// similar to Stilbene synthase 2 /// stilbene synthase 2	-	2e-4	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.	Please select
0.72	89.7	1610704_at	At3g54420	hypothetical protein LOC100246525	-	3e-2	At2g18120	SRS4 (SHI-RELATED SEQUENCE 4)	O.I.	H.G.	S.X.	Please select
0.72	89.7	1613344_at	At3g54420	-	-	4e+0	At5g17650	glycine/proline-rich protein	O.I.	H.G.	S.X.	Please select
0.72	89.7	1607058_at	At3g54420	hypothetical protein LOC100251716	-	7e-5	At2g46110	KPHMT1 (KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.71	89.5	1611385_at	At3g54420	-	-	1e+1	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	O.I.	H.G.	S.X.	Please select
0.70	88.6	1617355_at	At3g54420	hypothetical protein LOC100251716	-	9e-23	At3g61530	PANB2	O.I.	H.G.	S.X.	Please select
0.65	85.0	1607475_s_at	At3g54420	O-methyltransferase-like	-	6e-6	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.65	85.0	1620342_at	At3g54420	O-methyltransferase-like	-	3e-5	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.63	84.3	1615581_at	At3g54420	-	-	1e+0	At1g29540	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	1610800_at	At3g54420	-	-	2e+0	At2g35370	GDCH	O.I.	H.G.	S.X.	Please select
0.56	79.4	1621580_at	At3g54420	-	-	3e-5	At1g48860	3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative	O.I.	H.G.	S.X.	Please select
0.55	77.3	1614910_at	At3g54420	hypothetical protein LOC100262364	-	6e+0	At5g48580	FKBP15-2	O.I.	H.G.	S.X.	Please select
0.50	72.7	1622670_s_at	At3g54420	hypothetical protein LOC100242012	-	1e+1	At5g05590	PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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