CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.987.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g54420: ATEP3 (HF=5e-29)

Module size 6 genes

NF 0.52

%ile 82.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.95 Ptp.987.1.S1_at BU895364 - - 5e-29 At3g54420 ATEP3 O.I. H.G. S.X.
0.67 91.1 0.95 PtpAffx.57544.1.A1_at CV266909 - - 3e-1 At3g07920 translation initiation factor O.I. H.G. S.X.
0.50 78.6 0.95 Ptp.6077.1.S1_s_at BI122891 hypothetical protein - 1e+0 At4g21920 unknown protein O.I. H.G. S.X.
0.36 61.6 0.95 Ptp.7181.1.S1_at DN488307 hypothetical protein - 2e-6 At1g49570 peroxidase, putative O.I. H.G. S.X.
0.36 61.6 0.96 PtpAffx.225157.1.S1_at pmrna44294 hypothetical protein - 1e-13 At1g14550 anionic peroxidase, putative O.I. H.G. S.X.
0.35 59.7 0.94 PtpAffx.200248.1.S1_at pmrna481 hypothetical protein - 3e-7 At3g43740 leucine-rich repeat family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.2 96.8 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.2 95.6 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.1 95.5 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the rice gene, Os04g0494100, orthologous to the query gene, Ptp.987.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 96.4 Os04g0494100 At3g54420 - Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A) 1e-1 At2g43590 chitinase, putative O.I. H.G. S.X.
0.73 91.1 Os04g0493400 At3g54420 - Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A) 4e-2 At3g54420 ATEP3 O.I. H.G. S.X.
0.73 91.1 Os01g0382400 At3g54420 - Pathogenesis-related protein PRB1-2 precursor 1e-1 At3g09590 pathogenesis-related protein, putative O.I. H.G. S.X.
0.61 81.2 Os03g0624300 At3g54420 - Hypothetical protein 1e+0 At5g43211 unknown protein O.I. H.G. S.X.
0.60 79.7 Os01g0944700 At3g54420 - Glucan endo-1,3-beta-glucosidase GII precursor (EC3.2.1.39) ((1->3)- beta-glucan endohydrolase GII)((1->3)-beta-glucanase isoenzyme GII)(Beta-1,3-endoglucanase GII) 1e-2 At5g20560 beta-1,3-glucanase, putative O.I. H.G. S.X.
0.50 68.0 Os11g0592200 At3g54420 - Barwin domain containing protein 8e-2 At3g04720 PR4 (PATHOGENESIS-RELATED 4) O.I. H.G. S.X.
0.44 58.1 Os12g0630200 At3g54420 - Antifungal protein R (Fragment) 1e-1 At3g55880 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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