Co-expression analysis

Gene ID	Ptp.987.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g54420: ATEP3 (HF=5e-29)
Module size	6 genes
NF	0.52
%ile	82.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.95	Ptp.987.1.S1_at	BU895364	-	-	5e-29	At3g54420	ATEP3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.57544.1.A1_at	CV266909	-	-	3e-1	At3g07920	translation initiation factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	Ptp.6077.1.S1_s_at	BI122891	hypothetical protein	-	1e+0	At4g21920	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	Ptp.7181.1.S1_at	DN488307	hypothetical protein	-	2e-6	At1g49570	peroxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.96	PtpAffx.225157.1.S1_at	pmrna44294	hypothetical protein	-	1e-13	At1g14550	anionic peroxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.94	PtpAffx.200248.1.S1_at	pmrna481	hypothetical protein	-	3e-7	At3g43740	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.8	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the barley gene, Contig4324_s_at, orthologous to the query gene, Ptp.987.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	Contig4324_s_at	At3g54420	-	-	8e+0	At4g26060	unknown protein	O.I.	H.G.	S.X.	Please select
0.84	94.3	Contig10453_at	At3g54420	-	-	9e-1	At5g19485	transferase	O.I.	H.G.	S.X.	Please select
0.75	89.5	Contig5969_at	At3g54420	-	-	7e-4	At1g64970	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig4324_at	At3g54420	-	-	8e+0	At4g26060	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig11946_at	At3g54420	-	-	2e+0	At1g49950	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig13318_at	At3g54420	-	-	1e-2	At3g59010	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	Contig5966_at	At3g54420	-	-	9e-2	At4g33360	terpene cyclase/mutase-related	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig5809_at	At3g54420	-	-	2e-14	At1g58440	XF1	O.I.	H.G.	S.X.	Please select
0.48	63.2	Contig5490_at	At3g54420	-	-	3e-1	At3g14680	CYP72A14	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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