Co-expression analysis

Gene ID	Ptp.987.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g54420: ATEP3 (HF=5e-29)
Module size	6 genes
NF	0.52
%ile	82.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.95	Ptp.987.1.S1_at	BU895364	-	-	5e-29	At3g54420	ATEP3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.57544.1.A1_at	CV266909	-	-	3e-1	At3g07920	translation initiation factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	Ptp.6077.1.S1_s_at	BI122891	hypothetical protein	-	1e+0	At4g21920	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	Ptp.7181.1.S1_at	DN488307	hypothetical protein	-	2e-6	At1g49570	peroxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.96	PtpAffx.225157.1.S1_at	pmrna44294	hypothetical protein	-	1e-13	At1g14550	anionic peroxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.94	PtpAffx.200248.1.S1_at	pmrna481	hypothetical protein	-	3e-7	At3g43740	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.8	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.89972.1.S1_s_at, orthologous to the query gene, Ptp.987.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	93.5	GmaAffx.89972.1.S1_s_at	At3g54420	-	-	6e-5	At2g43590	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.71	87.8	GmaAffx.18924.1.S1_at	At3g54420	-	-	1e-5	At2g18950	HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.64	83.4	GmaAffx.42847.1.S1_s_at	At3g54420	-	-	5e-12	At2g14580	ATPRB1	O.I.	H.G.	S.X.	Please select
0.61	81.8	GmaAffx.494.1.S1_at	At3g54420	-	-	1e+0	At5g41420	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	80.7	GmaAffx.36484.1.S1_s_at	At3g54420	-	-	3e-5	At2g14580	ATPRB1	O.I.	H.G.	S.X.	Please select
0.59	79.5	GmaAffx.90538.1.A1_s_at	At3g54420	-	-	8e-2	At2g24810	pathogenesis-related thaumatin family protein	O.I.	H.G.	S.X.	Please select
0.56	78.2	GmaAffx.18769.1.S1_at	At3g54420	-	-	3e+0	At2g24285	-	O.I.	H.G.	S.X.	Please select
0.55	76.3	GmaAffx.41414.1.S1_s_at	At3g54420	-	-	3e+0	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	O.I.	H.G.	S.X.	Please select
0.53	74.2	GmaAffx.55244.2.S1_at	At3g54420	-	-	1e-3	At5g49700	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.52	73.1	GmaAffx.52146.1.S1_at	At3g54420	-	-	2e-4	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.51	72.3	GmaAffx.69694.1.S1_at	At3g54420	-	-	3e+0	At3g26980	MUB4 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.49	68.3	Gma.3713.1.S1_s_at	At3g54420	-	-	1e-1	At5g53050	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.48	67.7	Gma.7559.1.S1_s_at	At3g54420	-	-	1e-3	At2g41680	NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C)	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.74033.1.S1_s_at	At3g54420	-	-	2e-11	At1g79750	ATNADP-ME4 (NADP-malic enzyme 4)	O.I.	H.G.	S.X.	Please select
0.45	63.9	GmaAffx.92921.1.S1_at	At3g54420	-	-	4e-1	At2g31790	UDP-glucoronosyl/UDP-glucosyl transferase family protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	GmaAffx.46214.4.S1_at	At3g54420	-	-	4e+0	At5g35405	-	O.I.	H.G.	S.X.	Please select
0.43	60.6	Gma.16709.2.S1_s_at	At3g54420	-	-	6e-3	At5g36220	CYP81D1 (CYTOCHROME P450 81D1)	O.I.	H.G.	S.X.	Please select
0.41	58.1	PsAffx.psHB005xC21f_at	At3g54420	-	-	7e-11	At3g53720	ATCHX20 (CATION/H+ EXCHANGER 20)	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.78456.1.S1_at	At3g54420	-	-	4e-6	At2g46750	FAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	Gma.7631.1.A1_at	At3g54420	-	-	4e-13	At5g11670	ATNADP-ME2 (NADP-malic enzyme 2)	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.93314.1.S1_s_at	At3g54420	-	-	1e-3	At5g49040	disease resistance-responsive protein-related / dirigent protein-related	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.2821.2.S1_a_at	At3g54420	PR-5 protein	-	2e-2	At4g11650	ATOSM34 (osmotin 34)	O.I.	H.G.	S.X.	Please select
0.35	48.6	GmaAffx.92699.1.S1_s_at	At3g54420	PR-5 protein	-	2e+1	At5g42860	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.6719.3.S1_s_at	At3g54420	-	-	4e-1	At5g18540	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.93133.1.S1_s_at	At3g54420	-	-	4e-1	At2g12880	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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