CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.987.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g54420: ATEP3 (HF=5e-29)

Module size 6 genes

NF 0.52

%ile 82.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.95 Ptp.987.1.S1_at BU895364 - - 5e-29 At3g54420 ATEP3 O.I. H.G. S.X.
0.67 91.1 0.95 PtpAffx.57544.1.A1_at CV266909 - - 3e-1 At3g07920 translation initiation factor O.I. H.G. S.X.
0.50 78.6 0.95 Ptp.6077.1.S1_s_at BI122891 hypothetical protein - 1e+0 At4g21920 unknown protein O.I. H.G. S.X.
0.36 61.6 0.95 Ptp.7181.1.S1_at DN488307 hypothetical protein - 2e-6 At1g49570 peroxidase, putative O.I. H.G. S.X.
0.36 61.6 0.96 PtpAffx.225157.1.S1_at pmrna44294 hypothetical protein - 1e-13 At1g14550 anionic peroxidase, putative O.I. H.G. S.X.
0.35 59.7 0.94 PtpAffx.200248.1.S1_at pmrna481 hypothetical protein - 3e-7 At3g43740 leucine-rich repeat family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.2 96.8 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.2 95.6 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.1 95.5 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g54420, orthologous to the query gene, Ptp.987.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At3g54420 824608 ATEP3 encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs. O.I. H.G. S.X.
0.67 81.6 At1g51790 841605 kinase F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. H.G. S.X.
0.67 81.6 At2g39200 818505 MLO12 (MILDEW RESISTANCE LOCUS O 12) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in root tips and cotyledon vascular system, in floral organs (anthers and stigma), and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). O.I. H.G. S.X.
0.57 73.8 At1g51800 841606 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. H.G. S.X.
0.57 73.8 At4g20860 827834 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to cyclopentenone;C:endomembrane system;BFPOAM O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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